FC920816

Overview
NameFC920816
Unique NameFC920816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_FRASN (S-adenosylmethionine synthetase OS=Frankia sp. (strain EAN1pec) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 103/199 (51.76%), Postives = 125/199 (62.81%), Query Frame = 2
Query:   86 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLI 658
            T LFTSESV EGHPDK+ DQ+SD++LDA L+ DP+S+VA ET   T  V V GE+TTK  VD   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV      R E          GAGDQG MFG+A DET E MPL   LA +L  RL+ VRK+    +LRPDGKTQVT+EY +      PVR+ TV++
Sbjct:    3 TRLFTSESVTEGHPDKIADQVSDSILDAMLKDDPKSRVAVETMITTGQVHVAGEVTTKTYVDIASVVRERILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAHEARVEGSTEDDLDRQGAGDQGLMFGFACDETPELMPLPIALAHRLARRLSAVRKDGQVGYLRPDGKTQVTIEYEDGK----PVRLDTVVV 197          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_CYAA5 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = 2
Query:   83 RTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            R +LFTSESV EGHPDK+CDQISD ++D  L  D +S+VA E    T +V++ GE+T+KA V++ ++ R     IG+ + D G  A+ C VLV +++QSPDIAQGV     +R        + IGAGDQG MFGYA +ET E MPL   LA +   RL  VRK     +LRPDGKTQV++ Y +     +PV + T+LI T
Sbjct:    3 RRYLFTSESVTEGHPDKICDQISDTIIDTLLYHDDQSRVAAEVVVNTGLVLITGEVTSKANVNFVELARKKIAEIGYTNADNGFSANSCAVLVALDEQSPDIAQGVTQAHEQRQALSDDELDQIGAGDQGIMFGYACNETPELMPLPISLAHRFSRRLAAVRKTGDLGYLRPDGKTQVSIVYEDG----IPVGIDTILIST 199          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_BURVG (S-adenosylmethionine synthetase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=metK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.047e-45
Identity = 99/192 (51.56%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   89 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            + FTSESV+EGHPDK+ DQISDA+LDA LEQD  S+VA ET   T +V++ GEITT A +DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MPL   L+ +L  R   +R++    WLRPD K+QVT+ Y +      P  + TV++ T
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDRAHDDN-LDQGAGDQGLMFGYACDETPELMPLPIYLSHRLVERQASLRRDGRLPWLRPDAKSQVTIRYVDGK----PDSIDTVVLST 191          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_VEREI (S-adenosylmethionine synthetase OS=Verminephrobacter eiseniae (strain EF01-2) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 100/192 (52.08%), Postives = 127/192 (66.15%), Query Frame = 2
Query:   89 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            FLFTSESV+EGHPDK+ DQISDA+LDA L QDP S+VA ET T T +V++ GEI+T A VDY ++ RDT R IG+   D G+D   C VLV  ++QS DIAQGV  H +    + GAGDQG MFGYA DET E MP     A +L  R  ++RK+    +LRPD K+QVT+ Y +      P  + TV++ T
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDALLRQDPRSRVAAETLTNTGLVVLAGEISTNAHVDYIQVARDTIRRIGYDDTDYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTLRYVDGK----PHSIDTVVLST 191          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 99/192 (51.56%), Postives = 128/192 (66.67%), Query Frame = 2
Query:   89 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            FLFTSESV+EGHPDK+ DQISDA+LDA  EQDP S+VA ET T T +V++ GEITT A VDY ++ RDT + IG+ + D G+D   C V+V  ++QS DIAQGV  H +    + GAGDQG MFGYA DET E MP     A +L  R  ++RK+    +LRPD K+QVT+ Y +      P  + TV++ T
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVMVCYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRYVDGK----PHSIDTVVLST 191          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_THICR (S-adenosylmethionine synthetase OS=Thiomicrospira crunogena (strain XCL-2) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 98/193 (50.78%), Postives = 128/193 (66.32%), Query Frame = 2
Query:   86 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            T +FTSESV+EGHPDK+ DQISDA+LDA ++QDP+++VACET  KT MVM+ GEITT A VD E++VR     IG+   D+G D + C VL +I +QSP+IAQGV  +      + GAGDQG MFGYA++ET   MP     A +L  +  E+RK     WLRPD K+QVT+ Y +      PV V  V++ T
Sbjct:    3 TTVFTSESVSEGHPDKIADQISDAMLDAIMKQDPKARVACETFVKTGMVMLGGEITTSAWVDQEELVRQVVNDIGYNHGDLGFDGETCAVLSSIGKQSPEIAQGVDEY---EDHEQGAGDQGLMFGYASNETDVLMPAPIYFAHRLMEKQAELRKAGKLDWLRPDAKSQVTLRYEDGQ----PVAVDAVVLST 188          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_STRT2 (S-adenosylmethionine synthetase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=metK PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 105/199 (52.76%), Postives = 133/199 (66.83%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEY-YNDXGAMVPVRVHTVLIFT 664
            LFTSESV+EGHPDK+ DQISDA+LDA L +DP++ VA ET   T  V VFGE++T A VD  ++VRDT   IG+ + + G  A+   V  ++ +QSPDIAQGV+     R        + IGAGDQG MFG+A DET EFMPL   L+ KL  +L ++RK+   S+LRPD K+QVTVEY  ND     PVRV TV+I T
Sbjct:    6 LFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEVSTTAYVDINRVVRDTIAEIGYNNAEYGFAAESVGVHPSLIEQSPDIAQGVNESLEVRGTGDQDSLDLIGAGDQGLMFGFAIDETPEFMPLPVSLSHKLVKKLADLRKSGEISYLRPDAKSQVTVEYDENDQ----PVRVDTVVIST 200          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_STRFR (S-adenosylmethionine synthetase OS=Streptomyces fradiae GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 106/201 (52.74%), Postives = 127/201 (63.18%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR--------PED----IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLI 658
            LFTSESV EGHPDK+ D+ISD VLDA L +DP ++VA ET   T  V + GE+TT A     ++VRDT  SIG+ S   G D   C V V+I  QSPDIA+GV   + +R        P D     GAGDQG MFGYA DET E MPL   LA +L  RL+EVRKN T  +LRPDGKTQVT+EY  D      VR+ TV++
Sbjct:    5 LFTSESVTEGHPDKIADRISDTVLDALLARDPRARVAVETLITTGQVHIAGEVTTTAYAPIAQLVRDTVLSIGYDSSAKGFDGASCGVSVSIGAQSPDIARGVDTAYERRGGGTAPGGPGDELDRQGAGDQGLMFGYACDETPELMPLPINLAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKA----VRLDTVVV 201          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_STAHJ (S-adenosylmethionine synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 2
Query:   74 MRWRTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLI 658
            M +   LFTSESV EGHPDK+ DQ+SDA+LD  L+ DP ++VACET   T M ++ GEI+T   VD  K+VR+T + IG+     G D     VL  I++QSPDIAQGV      R        E  GAGDQG MFGYAT+ET  +MPL   L+ +L  RL++VRK+   ++LRPDGK QVTVEY        P R+ T+++
Sbjct:    1 MTYNKRLFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTSTYVDIPKVVRETIKGIGYTRAKYGYDYQTMAVLTAIDEQSPDIAQGVDKALEYRNDISEEEIEATGAGDQGLMFGYATNETETYMPLPIFLSHQLAKRLSDVRKDGILNYLRPDGKVQVTVEYDESD---KPKRIDTIVV 199          
BLAST of FC920816 vs. ExPASy Swiss-Prot
Match: METK_MYCGI (S-adenosylmethionine synthetase OS=Mycobacterium gilvum (strain PYR-GCK) GN=metK PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.368e-45
Identity = 108/201 (53.73%), Postives = 127/201 (63.18%), Query Frame = 2
Query:   92 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK---VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH-GHFTK-----RPEDI-GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDXGAMVPVRVHTVLIFT 664
            LFTSESV EGHPDK+CD ISD+VLDA L  DP+S+VA ET   T  V V GE+TT AK    D    VR+    IG+   D G D + C V + I +QSPDIAQGV   H T+      P D  GAGDQG MFGYA  +T E MPL   LA +L  +LTEVRKN T  +LRPDGKTQVTV+Y        PVR+ TV++ T
Sbjct:    6 LFTSESVTEGHPDKICDAISDSVLDALLAGDPKSRVAVETLVTTGQVHVVGEVTTNAKEAFADITNTVRERILEIGYDHSDKGFDGETCGVNIGIGRQSPDIAQGVDTAHETRVGGAADPLDSQGAGDQGLMFGYAIADTPELMPLPIALAHRLSRKLTEVRKNGTLDYLRPDGKTQVTVQY----DGTTPVRLDTVVLST 202          
The following BLAST results are available for this feature:
BLAST of FC920816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_FRASN1.047e-4551.76S-adenosylmethionine synthetase OS=Frankia sp. (st... [more]
METK_CYAA51.047e-4547.76S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_BURVG1.047e-4551.56S-adenosylmethionine synthetase OS=Burkholderia vi... [more]
METK_VEREI1.368e-4552.08S-adenosylmethionine synthetase OS=Verminephrobact... [more]
METK_VARPS1.368e-4551.56S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_THICR1.368e-4550.78S-adenosylmethionine synthetase OS=Thiomicrospira ... [more]
METK_STRT21.368e-4552.76S-adenosylmethionine synthetase OS=Streptococcus t... [more]
METK_STRFR1.368e-4552.74S-adenosylmethionine synthetase OS=Streptomyces fr... [more]
METK_STAHJ1.368e-4548.51S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_MYCGI1.368e-4553.73S-adenosylmethionine synthetase OS=Mycobacterium g... [more]

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Properties
Property NameValue
Genbank descriptionC32013D06EF RVDevelop1 Citrus clementina cDNA clone C32013D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920816 ID=FC920816; Name=FC920816; organism=Citrus clementina; type=EST; length=698bp
GCTTTGCTATGGGGGTCTGGTCTTAAGGGGGAATCTTAGGTCTGCGCCGA
AACACTTGGCAGCGAGCAGCTTGATGAGATGGAGGACCTTTCTATTCACC
TCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGACCAGATCTC
TGATGCGGTGCTTGACGCCTGCCTTGAGCAGGATCCTGAGAGCAAGGTTG
CCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATT
ACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGACACTTGCCG
TTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGACGCCGATCACTGCA
AAGTCCTGGTCAATATTGAGCAACAAAGCCCGGATATTGCCCAGGGTGTT
CATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGGTGACCAGGG
CCATATGTTTGGTTATGCTACTGATGAGACCTCTGAATTTATGCCTTTGA
GCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAGGTTAGGAAG
AATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCAGGTCACTGT
TGAGTACTACAACGACNATGGTGCCATGGTCCCAGTCCGTGTCCACACGG
TCCTCATTTTCACCAGCATGATGAGACTGTCACAATGATGAAATGCTG
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