FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PSEMY (50S ribosomal protein L4 OS=Pseudomonas mendocina (strain ymp) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  198 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLH 557
            +VH+A++  M   R+GT    +R +V GGG++P+ QK TGRAR G+ R P+  GGGV F    R+   K+NKK  R             +  +VVE+F    E PKTK  +  +   GL+
Sbjct:   26 LVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWRQKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVVEDF--AVEAPKTKALLSKLNGLGLN 143          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROAC (50S ribosomal protein L4 OS=Propionibacterium acnes GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416
            + +L   G+K G   L       +T   ++H+ ++  +   R+GT +T TRG+V GGG+KP+ QK TGRAR+GS R P   GGG V GP+PR ++ +  KK
Sbjct:    7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKK 107          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MYCLE (50S ribosomal protein L4 OS=Mycobacterium leprae GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  195 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416
            A++H+ +       R+GT ST TRG+V GGGRKPY QK TGRAR+GS R P   GGG+V GPK RD+S +  KK
Sbjct:   41 ALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKK 114          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MYCLB (50S ribosomal protein L4 OS=Mycobacterium leprae (strain Br4923) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  195 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416
            A++H+ +       R+GT ST TRG+V GGGRKPY QK TGRAR+GS R P   GGG+V GPK RD+S +  KK
Sbjct:   41 ALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKK 114          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LEPBP (50S ribosomal protein L4 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKR 425
            G  + E  L  +  A   +   ++ A+  +  N R+GT ST  R EVRGGG KP++QK TGRAR+GS R P   GGG++ GPKPRD+S  +++  K+
Sbjct:   10 GVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGGIKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKK 106          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LEPBA (50S ribosomal protein L4 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKR 425
            G  + E  L  +  A   +   ++ A+  +  N R+GT ST  R EVRGGG KP++QK TGRAR+GS R P   GGG++ GPKPRD+S  +++  K+
Sbjct:   10 GVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGGIKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKK 106          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESDA (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  225 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554
            M  KR GT +  TR  V GGG KP+ QK TGRAR GSNR+P+  GG + FGP PRD++ K+N K + L            E+ +VV+         KTK F +     GL
Sbjct:   41 MAAKRAGTHNVKTRAFVSGGGAKPWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAAESLMVVKGI--VLPEAKTKHFAKVADTLGL 148          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DEIDV (50S ribosomal protein L4 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  141 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554
            K G   +DL+   P+   A++H  +   + ++RRGTAST TR +V   G+K YSQK TG AR G    P   GGGV FGPKPR +   + +K ++L               I V+ FD      KTK F+    + GL
Sbjct:    9 KNGGRTIDLE--LPEVNAAILHDVVTWQLASRRRGTASTKTRAQVSKSGKKMYSQKGTGNARHGDRGVPTFVGGGVAFGPKPRSYGYTLPRKVRQLGLAMALADRQDGGKLIAVDGFD---LDGKTKSFVSWAAQNGL 141          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_COREF (50S ribosomal protein L4 OS=Corynebacterium efficiens GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416
            L + +  G   G   L  +    + + A++H+ +   +   R+GT ST TR EVRGGGRKP+ QK TGRAR+GS R P   GGG+  GPKPRD++ +  KK
Sbjct:    6 LDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGGRKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYAQRTPKK 106          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BUCA5 (50S ribosomal protein L4 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  177 APDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575
            A D   A++H+ +I    + R+GT +  +R EV G GRKP+ QK TGRAR GS R+P+   GGV F  KP++ S K+NKK  R             +  IV E F      PKTK  ++ ++   L    I T
Sbjct:   20 ARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSGRKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQKRLIVFENF--SLNAPKTKLLVQKLKDINLKNVLIVT 150          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_PSEMY1.125e-1537.5050S ribosomal protein L4 OS=Pseudomonas mendocina ... [more]
RL4_PROAC1.125e-1540.5950S ribosomal protein L4 OS=Propionibacterium acne... [more]
RL4_MYCLE1.125e-1555.4150S ribosomal protein L4 OS=Mycobacterium leprae G... [more]
RL4_MYCLB1.125e-1555.4150S ribosomal protein L4 OS=Mycobacterium leprae (... [more]
RL4_LEPBP1.125e-1543.3050S ribosomal protein L4 OS=Leptospira biflexa ser... [more]
RL4_LEPBA1.125e-1543.3050S ribosomal protein L4 OS=Leptospira biflexa ser... [more]
RL4_DESDA1.125e-1541.8250S ribosomal protein L4 OS=Desulfovibrio desulfur... [more]
RL4_DEIDV1.125e-1536.9650S ribosomal protein L4 OS=Deinococcus deserti (s... [more]
RL4_COREF1.125e-1543.5650S ribosomal protein L4 OS=Corynebacterium effici... [more]
RL4_BUCA51.125e-1537.5950S ribosomal protein L4 OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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