FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PSEMY (50S ribosomal protein L4 OS=Pseudomonas mendocina (strain ymp) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 3 Query: 198 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLH 557 +VH+A++ M R+GT +R +V GGG++P+ QK TGRAR G+ R P+ GGGV F R+ K+NKK R + +VVE+F E PKTK + + GL+ Sbjct: 26 LVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWRQKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVVEDF--AVEAPKTKALLSKLNGLGLN 143
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PROAC (50S ribosomal protein L4 OS=Propionibacterium acnes GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416 + +L G+K G L +T ++H+ ++ + R+GT +T TRG+V GGG+KP+ QK TGRAR+GS R P GGG V GP+PR ++ + KK Sbjct: 7 IDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKK 107
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MYCLE (50S ribosomal protein L4 OS=Mycobacterium leprae GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 195 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416 A++H+ + R+GT ST TRG+V GGGRKPY QK TGRAR+GS R P GGG+V GPK RD+S + KK Sbjct: 41 ALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKK 114
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_MYCLB (50S ribosomal protein L4 OS=Mycobacterium leprae (strain Br4923) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 195 AVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416 A++H+ + R+GT ST TRG+V GGGRKPY QK TGRAR+GS R P GGG+V GPK RD+S + KK Sbjct: 41 ALMHQVVTAQRAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKK 114
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LEPBP (50S ribosomal protein L4 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKR 425 G + E L + A + ++ A+ + N R+GT ST R EVRGGG KP++QK TGRAR+GS R P GGG++ GPKPRD+S +++ K+ Sbjct: 10 GVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGGIKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKK 106
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LEPBA (50S ribosomal protein L4 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKR 425 G + E L + A + ++ A+ + N R+GT ST R EVRGGG KP++QK TGRAR+GS R P GGG++ GPKPRD+S +++ K+ Sbjct: 10 GVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGGIKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKK 106
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESDA (50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 46/110 (41.82%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 225 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554 M KR GT + TR V GGG KP+ QK TGRAR GSNR+P+ GG + FGP PRD++ K+N K + L E+ +VV+ KTK F + GL Sbjct: 41 MAAKRAGTHNVKTRAFVSGGGAKPWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAAESLMVVKGI--VLPEAKTKHFAKVADTLGL 148
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DEIDV (50S ribosomal protein L4 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 51/138 (36.96%), Postives = 70/138 (50.72%), Query Frame = 3 Query: 141 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGL 554 K G +DL+ P+ A++H + + ++RRGTAST TR +V G+K YSQK TG AR G P GGGV FGPKPR + + +K ++L I V+ FD KTK F+ + GL Sbjct: 9 KNGGRTIDLE--LPEVNAAILHDVVTWQLASRRRGTASTKTRAQVSKSGKKMYSQKGTGNARHGDRGVPTFVGGGVAFGPKPRSYGYTLPRKVRQLGLAMALADRQDGGKLIAVDGFD---LDGKTKSFVSWAAQNGL 141
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_COREF (50S ribosomal protein L4 OS=Corynebacterium efficiens GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKK 416 L + + G G L + + + A++H+ + + R+GT ST TR EVRGGGRKP+ QK TGRAR+GS R P GGG+ GPKPRD++ + KK Sbjct: 6 LDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGGRKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYAQRTPKK 106
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BUCA5 (50S ribosomal protein L4 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=rplD PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 3 Query: 177 APDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIAT 575 A D A++H+ +I + R+GT + +R EV G GRKP+ QK TGRAR GS R+P+ GGV F KP++ S K+NKK R + IV E F PKTK ++ ++ L I T Sbjct: 20 ARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSGRKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQKRLIVFENF--SLNAPKTKLLVQKLKDINLKNVLIVT 150 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |