FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ACHLI (50S ribosomal protein L4 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            L + +  GEKI E  L+         + V++  +       R+GTA T TR EVRGGG+KP+ QK TGRAR+GS R+P   GGG+VFGP PR +++K+N+K K+L            EN ++V+        PKTK FIE M    L  + I  +LV  V +N+
Sbjct:    4 LNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGGGKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLAENLVLVDNI--TVAEPKTKLFIEIMNNLKLDDRSI--VLVDSVDKNL 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590
            G K G+  L+      +    VV  A++    + R+GT +   R  VRGGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR ++  I KK +RL            E+ +VV+EF  KFE PKTK+F +++    +  K    LLV+E
Sbjct:   11 GTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVDKK---ALLVLE 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKE 524
            + +  G+++GE  L           AV+H  ++  + N+R+GT  T TR EVRGGGRKP+ QK TGRAR G+ R+P+  GGG+VFGP PRD+S ++ KK KRL               +V++  +     PKTKE
Sbjct:    6 VFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDAGRILVLDALE--LPGPKTKE 138          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LAWIP (50S ribosomal protein L4 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22
Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  138 EKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLH 557
            E+ G+  L  K         ++H  +   +  KR GT S  TRG V GGG KP+ QK TGRAR GSNR+PL  GGG+VFGP+PRD+S K+NKK + L            EN IV++         KTK F+      GLH
Sbjct:   12 EETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGAKPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAEENLIVIDNI--VLPEIKTKHFVGVANILGLH 149          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLP8 (50S ribosomal protein L4 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplD PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            L +L+  G + GE   L+    A + +   ++  +   + N+R+GT  T TR EVRGGG+KPY QK TG AR+GS+R+P+  GGG +FGP+PR +  K+N+K K+L               +VVE+F    E  KT+   + ++  GL  K+  TLL+M   +NV
Sbjct:    3 LKVLNIQGAETGEVVTLNDDIFAVEVSEHAMYLDVKAILANRRQGTHKTKTRAEVRGGGKKPYRQKGTGNARQGSSRSPIMVGGGTIFGPQPRSYEQKVNRKVKQLARRSALSSKAAAGQIVVVEDF--SLESIKTRPVADMLKNLGLAEKK--TLLMMPHYDNV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_FINM2 (50S ribosomal protein L4 OS=Finegoldia magna (strain ATCC 29328) GN=rplD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.764e-22
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 542
            IL+  GE +GE  L+      D    VV+  +   + NKR+GT S  TR EVRGGGRKP+ QK TGRAR+GS R+P   GGGVVF PKPRD+S  + KK +RL               IV+++ +   +   TK+ +E ++
Sbjct:    6 ILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVNDNEMIVLDKLN--LDAISTKKAVEVLK 144          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESPS (50S ribosomal protein L4 OS=Desulfotalea psychrophila GN=rplD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = 3
Query:   99 QLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            ++ S + +++   EK+ E  L+      +    ++H  +      KR GTAST TR EVRGGG KP+ QK TGRAR GS  +PL  GGGV FGPKPRD+S K+N+K ++              N IV++ F    +  KTKEF   M+   L     A +++ + SEN+
Sbjct:    3 RIMSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNF--IMDAIKTKEFASTMKTLEL---ANALIVMDDASENL 166          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_FUSNN (50S ribosomal protein L4 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 3
Query:  114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569
            L I +  GE+ G   ++      +  + V+H  L  ++   R+GTAST TR  VRGGGRKP+ QK TGRAR+G+ R P   GGGV FGP PR +  K+NKK + L             N +V+ ++DG  E PKTK  +  + +     KQ+
Sbjct:    4 LNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVL-DYDG-IETPKTKVIVNLVNKVDAKQKQL 153          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLPD (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22
Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578
            L +L+ +G + GE   L+ +    + +   ++  + + + NKR+GT    TR +VRGGGRKPY QK TG AR+GS R+PL  GGG +FGP+PR +  K+NKK K L               +V+E+F  + +  KTK   E ++  GL  K+I  L
Sbjct:    3 LKVLNTSGTETGEVVTLNEEIFGVEVSEHAMYLDVKSILANKRQGTHKAKTRAQVRGGGRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKLLARRSALSAKAKAGKILVIEDF--RLDAIKTKPVAEILKNLGLEQKKILML 156          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THELT (50S ribosomal protein L4 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplD PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22
Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  120 ILSFTGEKIGETYL--DLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599
            + +  GEK+G   L  D+ +  P+    V+ R +   +  +R GT ST TR EV GGGRKP+ QK TGRAR GS R+P+   GGV  GPKPRDWS K+ KK K+L             N IVV++    F+  KTK   + ++ +G   K+I  +L  + SE
Sbjct:    6 LYNMKGEKVGTQELKDDIFNIEPNFD--VMWRYVDYQLSLRRAGTVSTKTRSEVSGGGRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPKKMKKLALKSALSQRFKEGNIIVVDDIG--FDSSKTKNMRQLIKAFGFEGKKILFVLPWKRSE 163          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_ACHLI9.501e-2339.6350S ribosomal protein L4 OS=Acholeplasma laidlawii... [more]
RL4_PEDPA1.241e-2240.7950S ribosomal protein L4 OS=Pediococcus pentosaceu... [more]
RL4_DESAP1.241e-2240.7450S ribosomal protein L4 OS=Desulforudis audaxviat... [more]
RL4_LAWIP2.117e-2242.1450S ribosomal protein L4 OS=Lawsonia intracellular... [more]
RL4_CHLP82.117e-2237.5850S ribosomal protein L4 OS=Chlorobaculum parvum (... [more]
RL4_FINM22.764e-2241.8450S ribosomal protein L4 OS=Finegoldia magna (stra... [more]
RL4_DESPS3.610e-2237.8750S ribosomal protein L4 OS=Desulfotalea psychroph... [more]
RL4_FUSNN4.715e-2238.8250S ribosomal protein L4 OS=Fusobacterium nucleatu... [more]
RL4_CHLPD4.715e-2237.8250S ribosomal protein L4 OS=Chlorobium phaeobacter... [more]
RL4_THELT8.043e-2240.1250S ribosomal protein L4 OS=Thermotoga lettingae (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
back to top