FC920824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ACHLI (50S ribosomal protein L4 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23 Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 L + + GEKI E L+ + V++ + R+GTA T TR EVRGGG+KP+ QK TGRAR+GS R+P GGG+VFGP PR +++K+N+K K+L EN ++V+ PKTK FIE M L + I +LV V +N+ Sbjct: 4 LNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGGGKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLAENLVLVDNI--TVAEPKTKLFIEIMNNLKLDDRSI--VLVDSVDKNL 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22 Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = 3 Query: 135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVME 590 G K G+ L+ + VV A++ + R+GT + R VRGGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR ++ I KK +RL E+ +VV+EF KFE PKTK+F +++ + K LLV+E Sbjct: 11 GTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVDKK---ALLVLE 157
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.241e-22 Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKE 524 + + G+++GE L AV+H ++ + N+R+GT T TR EVRGGGRKP+ QK TGRAR G+ R+P+ GGG+VFGP PRD+S ++ KK KRL +V++ + PKTKE Sbjct: 6 VFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDAGRILVLDALE--LPGPKTKE 138
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_LAWIP (50S ribosomal protein L4 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplD PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22 Identity = 59/140 (42.14%), Postives = 75/140 (53.57%), Query Frame = 3 Query: 138 EKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLH 557 E+ G+ L K ++H + + KR GT S TRG V GGG KP+ QK TGRAR GSNR+PL GGG+VFGP+PRD+S K+NKK + L EN IV++ KTK F+ GLH Sbjct: 12 EETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGAKPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAEENLIVIDNI--VLPEIKTKHFVGVANILGLH 149
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLP8 (50S ribosomal protein L4 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplD PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.117e-22 Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 3 Query: 114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 L +L+ G + GE L+ A + + ++ + + N+R+GT T TR EVRGGG+KPY QK TG AR+GS+R+P+ GGG +FGP+PR + K+N+K K+L +VVE+F E KT+ + ++ GL K+ TLL+M +NV Sbjct: 3 LKVLNIQGAETGEVVTLNDDIFAVEVSEHAMYLDVKAILANRRQGTHKTKTRAEVRGGGKKPYRQKGTGNARQGSSRSPIMVGGGTIFGPQPRSYEQKVNRKVKQLARRSALSSKAAAGQIVVVEDF--SLESIKTRPVADMLKNLGLAEKK--TLLMMPHYDNV 163
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_FINM2 (50S ribosomal protein L4 OS=Finegoldia magna (strain ATCC 29328) GN=rplD PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.764e-22 Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMR 542 IL+ GE +GE L+ D VV+ + + NKR+GT S TR EVRGGGRKP+ QK TGRAR+GS R+P GGGVVF PKPRD+S + KK +RL IV+++ + + TK+ +E ++ Sbjct: 6 ILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVNDNEMIVLDKLN--LDAISTKKAVEVLK 144
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESPS (50S ribosomal protein L4 OS=Desulfotalea psychrophila GN=rplD PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22 Identity = 64/169 (37.87%), Postives = 92/169 (54.44%), Query Frame = 3 Query: 99 QLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605 ++ S + +++ EK+ E L+ + ++H + KR GTAST TR EVRGGG KP+ QK TGRAR GS +PL GGGV FGPKPRD+S K+N+K ++ N IV++ F + KTKEF M+ L A +++ + SEN+ Sbjct: 3 RIMSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNF--IMDAIKTKEFASTMKTLEL---ANALIVMDDASENL 166
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_FUSNN (50S ribosomal protein L4 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplD PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22 Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 3 Query: 114 LPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQI 569 L I + GE+ G ++ + + V+H L ++ R+GTAST TR VRGGGRKP+ QK TGRAR+G+ R P GGGV FGP PR + K+NKK + L N +V+ ++DG E PKTK + + + KQ+ Sbjct: 4 LNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVL-DYDG-IETPKTKVIVNLVNKVDAKQKQL 153
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLPD (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplD PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22 Identity = 59/156 (37.82%), Postives = 88/156 (56.41%), Query Frame = 3 Query: 114 LPILSFTGEKIGETY-LDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATL 578 L +L+ +G + GE L+ + + + ++ + + + NKR+GT TR +VRGGGRKPY QK TG AR+GS R+PL GGG +FGP+PR + K+NKK K L +V+E+F + + KTK E ++ GL K+I L Sbjct: 3 LKVLNTSGTETGEVVTLNEEIFGVEVSEHAMYLDVKSILANKRQGTHKAKTRAQVRGGGRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKLLARRSALSAKAKAGKILVIEDF--RLDAIKTKPVAEILKNLGLEQKKILML 156
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_THELT (50S ribosomal protein L4 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplD PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22 Identity = 65/162 (40.12%), Postives = 90/162 (55.56%), Query Frame = 3 Query: 120 ILSFTGEKIGETYL--DLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSE 599 + + GEK+G L D+ + P+ V+ R + + +R GT ST TR EV GGGRKP+ QK TGRAR GS R+P+ GGV GPKPRDWS K+ KK K+L N IVV++ F+ KTK + ++ +G K+I +L + SE Sbjct: 6 LYNMKGEKVGTQELKDDIFNIEPNFD--VMWRYVDYQLSLRRAGTVSTKTRSEVSGGGRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPKKMKKLALKSALSQRFKEGNIIVVDDIG--FDSSKTKNMRQLIKAFGFEGKKILFVLPWKRSE 163 The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bpback to top |