FC920824

Overview
NameFC920824
Unique NameFC920824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_ANOFW (50S ribosomal protein L4 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.340e-21
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  135 GEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            GE IGE  L+      +  + V+  A+I    + R+GT  T  R EV GGGRKP+ QK TGRAR+GS R+P   GGGVVFGP PR +S K+ KK +RL            EN+IVV + +   E PKTKE ++ +    +  K  A ++  + +ENV
Sbjct:   11 GENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRL-AIKSALSSKVLENSIVVLD-NLTLEAPKTKEMVKILNNLSVDRK--ALIVTADANENV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_FERNB (50S ribosomal protein L4 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  120 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM--EVSENV 605
            + +  GEKIG   +  +    +    V+ R +   + N R GTAST TRGEV GGGRKP+ QK TGRAR+GS R      GGV  GPKPR++  ++NKK K+L             N IVV   D +FE+ +TK+  E ++  G+  +++  +L    EV ENV
Sbjct:    6 LYNIKGEKIGNIEIADEVFNVEPNLDVMWRYIDMQLTNSRAGTASTKTRGEVAGGGRKPWPQKHTGRARQGSIRAIHWRHGGVAHGPKPRNYLKRLNKKMKKLALKSALSARFQEGNLIVVS--DIRFEKAQTKQMREVLKNLGIADEKVLFVLPRKEEVYENV 167          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 3
Query:  198 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSEN 602
            ++H  + + +  KR+GT +T TRG  RGGG KP+ QK TGRAR GS R+PL  GGG  FGP+PRD+S K+NKK +RL            E  +VV+  D      KTK F+E     GL       L+V++ ++N
Sbjct:   32 ILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKMMVVKNID--LPEIKTKLFVEVAEALGLE----KALVVVKDADN 160          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_CHLCH (50S ribosomal protein L4 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  225 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVM 587
            + NKR+GT    TR EVRGGG+KP+ QK TG AR+GS+R+P+  GGG +FGP+P  +  K+NKK K L               +VV++F  +F+  KTK F + ++  GL  K+  TLL+M
Sbjct:   41 LANKRQGTHKAKTRSEVRGGGKKPFRQKGTGNARQGSSRSPIHVGGGTIFGPQPHTYEQKVNKKVKLLARRSALSAKAQAGKIVVVDDF--RFDAIKTKPFADILKNLGLDAKK--TLLLM 157          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACHK (50S ribosomal protein L4 OS=Bacillus thuringiensis subsp. konkukian GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACCZ (50S ribosomal protein L4 OS=Bacillus cereus (strain ZK / E33L) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACCR (50S ribosomal protein L4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACCQ (50S ribosomal protein L4 OS=Bacillus cereus (strain Q1) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACC7 (50S ribosomal protein L4 OS=Bacillus cereus (strain AH187) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
BLAST of FC920824 vs. ExPASy Swiss-Prot
Match: RL4_BACC4 (50S ribosomal protein L4 OS=Bacillus cereus (strain B4264) GN=rplD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  132 TGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLHPKQIATLLVMEVSENV 605
            TG ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++ A ++  + +E+V
Sbjct:   10 TGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESV 163          
The following BLAST results are available for this feature:
BLAST of FC920824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_ANOFW2.340e-2141.4050S ribosomal protein L4 OS=Anoxybacillus flavithe... [more]
RL4_FERNB3.056e-2139.6350S ribosomal protein L4 OS=Fervidobacterium nodos... [more]
RL4_DESAD3.056e-2142.2250S ribosomal protein L4 OS=Desulfovibrio salexige... [more]
RL4_CHLCH3.056e-2143.8050S ribosomal protein L4 OS=Chlorobium chlorochrom... [more]
RL4_BACHK3.056e-2137.9750S ribosomal protein L4 OS=Bacillus thuringiensis... [more]
RL4_BACCZ3.056e-2137.9750S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACCR3.056e-2137.9750S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACCQ3.056e-2137.9750S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC73.056e-2137.9750S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC43.056e-2137.9750S ribosomal protein L4 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32013E04EF RVDevelop1 Citrus clementina cDNA clone C32013E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920824 ID=FC920824; Name=FC920824; organism=Citrus clementina; type=EST; length=606bp
TCCTCACTTCATCTTCCAACAAAGTTCCAAAGCCCATTCAACTCGCCAAG
CCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCA
ACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATCGGCG
AGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGCGGTT
GTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGC
GTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACT
CTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTT
CGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGAT
TAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGA
GCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAG
TTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGG
TTTGCACCCGAAGCAGATAGCGACGCTCTTGGTGATGGAGGTGAGCGAGA
ATGTGG
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