FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.040e-47
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 3
Query:  345 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            VEGVVTL+QED GPTTV VR+TGLTPG HGFHLHE+GDTTNGC+STG+HFNP  +THGAP+D+VRHAGDLGNIVA ++GVAEATIVDNQI L GP++V+GRA VVHE
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHE 108          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.828e-36
Identity = 68/112 (60.71%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQE  GPTTV   V+GL PGPHGFH+H  GDTTNGC+STG HFNP    HGAP DEVRHAGDLGN+    +G A  TIVD QI L GP++++GRA VVH
Sbjct:    8 LSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L G+  V GV+  TQE+ GPTTV  +++GL PG HGFH+H  GDTTNGC+STG H+NP N  HGAP+DE RHAGDLGN+    +G AE TIVD QI L G  +++GRA VVH
Sbjct:    8 LSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.987e-35
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G V   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NPN   HGAP+D+VRHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH
Sbjct:    8 LSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.987e-35
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G V  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGNI    +G A  TI+D+QI L GPN++VGRA VVH
Sbjct:    8 LSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.426e-35
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L G ++V+GVV  TQE  GPTTV  +++GL+PG HGFH+H  GDTTNGC+STG HFNP    HGAP D+ RHAGDLGN+    +G  E +I D+QI L GP+++VGRA VVH
Sbjct:   10 LNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.780e-35
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 3
Query:  342 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            NV G++   QE +G PTT++  + GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG P DE+RH GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH
Sbjct:   13 NVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  TQE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH
Sbjct:    8 LGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 68/112 (60.71%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  TQE  G TTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP   THGAP+D  RHAGDLGNI    +G A  TI D+QI LDGPN++VGRA VVH
Sbjct:    8 LNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.196e-34
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQE  GPTTV   + GL PG HGFH+H  GDTTNGC+STGAHFNPNN  HGAP+DE RHAGDLGN+    +G    +I D+QI L GPN+++GRA VVH
Sbjct:    8 LGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGAHFNPNNNEHGAPEDENRHAGDLGNVNVGDDGTVSFSITDSQIPLTGPNSIIGRAVVVH 119          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODCP_PINSY5.040e-4779.44Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_PAUKA6.828e-3660.71Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_PANGI8.917e-3659.82Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_SPIOL1.987e-3560.71Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC1_MESCR1.987e-3561.61Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PINSY4.426e-3558.93Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_BRUPA5.780e-3560.19Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC4_MAIZE7.549e-3558.93Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC1_BRAJU1.288e-3460.71Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_SOYBN2.196e-3458.93Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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