FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.066e-33
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L GT +V+G +  +QE  GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGN+ A  +GV    I D+QI L GP++++GRA VVH
Sbjct:    8 LAGT-DVKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVH 118          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQ+   PTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  T+ D QI L GP +++GRA VVH
Sbjct:    8 LSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.228e-33
Identity = 62/112 (55.36%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQ   GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+D++RHAGDLGN+    +G    +I+D+QI L GPN++VGRA VVH
Sbjct:    8 LSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            + GT+ V+GVV  TQE D GP  V+   +GL  G HGFH+HE+GDTTNGC S GAHFNP    HGAP+D +RH GDLGN+VA A+G A     D  ISL+G ++++GR  V+HE
Sbjct:    7 MTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHE 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            + G +NV+G +   Q+  G T V  R+TGLTPG HGFH+H  GDTTNGC STG HFNP    HGAP D  RHAGDLGN+VA A+GVAE ++ D QI L G ++++GRA VVH
Sbjct:   10 INGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.205e-32
Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G    TQ    PTTVN  ++GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH
Sbjct:    8 LNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  342 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            N+ G +   Q+D   TT++  + GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG P DE+RH GDLGNIVA A+G A   I D  + L GPN+++GR+ VVH
Sbjct:   58 NINGTIHF-QQDKNSTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVH 163          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 65/112 (58.04%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  +QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP D+ RHAGDLGNI    +G A  TI D QI L G N+V+GRA VVH
Sbjct:    8 LSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  345 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            V G++   Q+ +G PTTV   V GLTPG HGFH+H+YGDTTNGCIS G HFNP N THG   DE+RH GDLGNI A A+G A  +I D  I L GPN+++GR+ VVH
Sbjct:   14 VSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CAVPO (Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 61/113 (53.98%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G++   Q+  GP  V  R+TGL  G HGFH+HE+GD T GC S G HFNP +  HG P+DE RH GDLGN+ A A+GVA  +I D+ ISL G N+++GR  VVHE
Sbjct:    9 LKGDGPVQGIIHFEQKANGPVVVKGRITGLVEGKHGFHVHEFGDNTQGCTSAGPHFNPLSKKHGGPQDEERHVGDLGNVTAGADGVANVSIEDSLISLSGANSIIGRTMVVHE 121          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC2_MAIZE7.066e-3358.04Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_NICPL9.228e-3356.25Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_CARPA9.228e-3355.36Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_SCHMA1.205e-3255.26Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC2_MESCR1.205e-3258.04Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC1_SOLLC1.205e-3257.14Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODE_BRUPA1.574e-3257.94Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_IPOBA2.056e-3258.04Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ONCVO2.685e-3259.81Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_CAVPO2.685e-3253.98Superoxide dismutase [Cu-Zn] OS=Cavia porcellus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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