FC920857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.820e-43 Identity = 82/164 (50.00%), Postives = 120/164 (73.17%), Query Frame = 2 Query: 179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 E + I+ WKI++LI+ LE A+GNGTS+ISLI+PP++QIS + + L D G A NIKS+ +++V AI S +Q+L + ++PPNGL+LY G + +D K EK++ EP + IN + +LC+N F+T+ L ++L+ DKFGFI+MDGNG+LFGTL GN RE+L Sbjct: 4 EQEDAIKGWKIRRLIEYLEKAKGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREIL 167
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29 Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 185 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 D+ I ++ K+ ++ L G GT +ISL +PP QIS V L DE+ T+SNIKS+ R++VLAAI S RLK Y PPNGLV + G + T + + T EP +PI +Y CD++FHTE L +L+ + +G IV+D G L+G EV+ Sbjct: 7 DEQIRRYEFKRALEELSKLHGRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVV 167
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29 Identity = 67/163 (41.10%), Postives = 94/163 (57.67%), Query Frame = 2 Query: 179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 E D+ I ++ K+ ++ L G GT +ISL +PP QIS V L DE+ T+SNIKS+ R++VLAAI S RLK Y PPNG V + G + T + + T EP +PI +Y CD++FH E L +LE + +G IV+D G L+G EV+ Sbjct: 5 EDDEQIRRYEFKRALEELSKLHGRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVV 167
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.539e-27 Identity = 63/156 (40.38%), Postives = 96/156 (61.54%), Query Frame = 2 Query: 194 IEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661 +E ++ +K+I+ LE+ RG GT +I++ +PP +++S V + +E+ ASNIKS+ R++V +AI QRLK+ + P NGLV+ GT V D KEK V EP +P++ +Y CD+KF+ E L E LE D +G +VMD G + G E Sbjct: 7 VERYRFRKMIERLENLRGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIE 161
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27 Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 2 Query: 188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 K+ E++++KK ++ L+S RG T ++SL +P I++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L D +G I ++ N G L G EV+ Sbjct: 4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27 Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 2 Query: 188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 K+ E++++KK ++ L+S RG T ++SL +P I++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY K P NGL L+ G V +G P +P+ LY CD F TE L E+L D +G I ++ N G L G EV+ Sbjct: 4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27 Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 2 Query: 182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 T + +++++KK I+ L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L D +G I ++ N G L G EVL Sbjct: 5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVL 166
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27 Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = 2 Query: 188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 K+ E++++KK ++ L+ RG T ++SL +P +++V + L +E+GTA NIKS+ R++VL A+ A Q LKLY + P GL L+ G V +G P +P+N LY CD F TE L E+L D +G I ++ N G L G EV+ Sbjct: 4 KSAEMYELKKKVEELKKIRGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVI 163
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26 Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 2 Query: 182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 T + +++++KK I+ L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L D +G I ++ N G L G E+L Sbjct: 5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELL 166
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26 Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 2 Query: 182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 T ++ +++++KK I L+ RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VL A+ A Q LKLY + P NGL L+ G V +G P +P+N LY CD F TE L E+L + +G I ++ N G L G EVL Sbjct: 5 TSRDAQLYELKKKIDELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVL 166 The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bpback to top |