FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPC (Chaperone protein htpG OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 74/220 (33.64%), Postives = 102/220 (46.36%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            +F+  F + LK G  ED  N+ ++A LLR+ ST +G      SL DY++RMKEGQ  IYYI  +S  A  NSP LE L+KKG EVL M + IDE+ +  L E++ K+L S T                            +  IK  LG               P C+VTGE   +  M ++M+A              K T E+NP +P++  L    D
Sbjct:  382 QFWAEFGQVLKEGPAEDFANRERIAGLLRFASTHTGSAAPTVSLDDYISRMKEGQTKIYYIVADSYDAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEYKEKQLHSVTRGELELGELEDAAEKEAQEKLAEESAPLIERIKAALGTKVADVKVTSRLTDTPACVVTGEGEMSTQMIKLMQAAG------QPVPEVKPTFEVNPAHPLVSRLNDLQD 595          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 75/219 (34.25%), Postives = 100/219 (45.66%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELT--SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            F+  F + LK G  ED  NK ++A LLR+ ST      T  SL+ Y+ RMK GQ+ IYYI  +S +A  NSP LE L+KKG EVL + + IDE+ V  L EF+ KKL S T                            +  +K  L                P C+V GE   +  M ++M+A             SK T EINP +P++E L    D
Sbjct:  383 FWAEFGQVLKEGPAEDFANKERIAGLLRFASTHDNSAATTVSLEAYIERMKAGQDKIYYIVADSHEAAANSPHLELLRKKGIEVLLLSERIDEWLVNHLTEFKDKKLHSVTRGDLELGELEDAADKEAHDKVAEESKGLIERVKAALADSVSEVRVTSRLTDTPACVVAGEGEMSTQMIKLMQAAG------QPVPESKPTFEINPTHPLVEHLNNETD 595          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 74/220 (33.64%), Postives = 102/220 (46.36%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            +F+  F + LK G  ED  N+ ++A LLR+ ST +G      SL DY++RMKEGQ  IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L E++ K+L S T                            V  IK  LG               P C+V G+   +  M ++M+A              K T EINP +P++  L    D
Sbjct:  382 QFWAEFGQVLKEGPAEDFANRERIAGLLRFASTHTGSAAPTVSLDDYISRMKEGQTKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEYKEKQLHSVTRGDLELGELEDAAEKEAQEKLEQESVALVERIKAALGSSVADVKVTSRLTDTPACVVAGDGEMSTQMIKLMQAAG------QPVPEVKPTFEINPAHPLVSRLNDLQD 595          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_PSEU2 (Chaperone protein htpG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=htpG PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 75/230 (32.61%), Postives = 108/230 (46.96%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDL 682
            F+++F + LK G  ED  NK K+A LLR+ ST   SG++  SL +Y+ R KEGQ+ IYY+TGES   V+NSP LE  +KKG EVL + D IDE+ +  L +F+GK  V                               +  +K  LG               P  L  GE      M +I++A   +         SK   E NP +P++ +L    DA++++    DL
Sbjct:  381 FWKNFGQVLKEGPAEDFANKEKIAGLLRFASTSDDSGEQSVSLAEYLARAKEGQDKIYYLTGESYAQVKNSPHLEVFRKKGIEVLLLTDRIDEWLMSYLSDFDGKGFVDVARGDLDLGNLDSEEDKKAQEEIAKDKEGLIERLKAALGESVSEVRVSHRLTDSPAILAIGEQDMGLQMRQILEASGQK------VPDSKPIFEFNPAHPLIGKL----DAEQSEDRFGDL 600          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SACD2 (Chaperone protein htpG OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 69/222 (31.08%), Postives = 107/222 (48.20%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHST--KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            F++ F + LK G  ED  NK K+A+LLR+ +T   + ++  SL  Y+ RMKEGQ+ IYY+  E+    +NSP LE  +KKG EVL + + ID++ +G L E++GK+   V                              + +K  L                P CLV GE+   A M R+++A             SK  +EINP +P++++L +  D D+
Sbjct:  381 FWKEFGEVLKEGPAEDFANKEKIAKLLRFATTHKNTNEQDQSLDAYIERMKEGQDKIYYVVAENFNTAKNSPHLEVFRKKGIEVLLLSNRIDDWLMGHLMEYDGKQFQDVGKGSLDLGKLDSEEDKKEQEKVEEAMAPFVERMKAALAEQVEEVRITHRLTESPACLVVGEHDMGAQMRRLLEAAG------QAVPESKPIIEINPTHPLVQKLDQEQDEDR 596          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MYCUA (Chaperone protein htpG OS=Mycobacterium ulcerans (strain Agy99) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 72/228 (31.58%), Postives = 108/228 (47.37%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLV 685
            F+  F K +K G+  D  N+  L E+  + ST S +E T+L  YV RMKE Q  I++ TG+S++ +  SP LE  + KGYEVL + + +DE  VG + EF+GK L S A                              +K+ LG               P CL+T  +G T  + RI +A              K+T+E+NP +P++  LR +A A  +D + K+ V
Sbjct:  391 FWTQFGKVVKEGLLADFDNRETLLEISSFASTHSEEEPTTLAGYVERMKEDQTQIFFATGDSRQQILKSPHLEAFRAKGYEVLLLTEPVDEVWVGVVNEFDGKPLQSVAKGEVDLDSDGEGSEAEREEQQKEFADLLGWLKETLGEQVKEVRLSTRLTESPACLITDTFGITPALARIYRATG------QDVPVGKRTLELNPTHPLVIGLR-QAQASADDDAKKEAV 611          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_PSYIN (Chaperone protein htpG OS=Psychromonas ingrahamii (strain 37) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 72/221 (32.58%), Postives = 104/221 (47.06%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            F++ F + LK G  EDS+NK K+ +L R+ ST+  S ++  SL  Y++RM EGQ+ IYYIT +S  A +NSP LE L++KG EVL + D IDE+ +  L E++GK   S T                            V  +K VLG               P C+V      +  M ++M               SK   E+NPE+ ++ +L   AD D
Sbjct:  383 FWKEFGQVLKEGPAEDSSNKEKIGKLFRFSSTETDSTEQTVSLDAYISRMTEGQDKIYYITADSFNAAKNSPHLEVLREKGIEVLLLSDRIDEWLLSHLPEYDGKTFTSVTQGDLDLGKLDSEEKKKEQEKQETEFASFVERVKAVLGDKVKDVRLTHRLTSTPSCIVADNDDMSTQMAKLMAQMG------QPVPESKPVFELNPEHVMIVKLADMADED 597          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_PSYA2 (Chaperone protein htpG OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 71/236 (30.08%), Postives = 110/236 (46.61%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEEL----RKRADADKNDKSVKDLVLL 691
            +FY  F   +K G+ ED  N+ ++A+LLRY ++    E+TS +DY  RMK+GQ  IYY+T ++  A +NSP LE  KKKG EV+ M   +DE+A+  L  F+   L  ++                               +K  LG               P CLV GE   +  M +++K              SK T+E+NP++P++++L    +   D DK  + + D  LL
Sbjct:  405 QFYAEFGDVIKEGVGEDMGNQERIAKLLRYATSTQDGEMTSFEDYKARMKDGQKAIYYLTADNLAAAKNSPQLELFKKKGIEVILMTSRVDEWAMNFLTSFDETPLQNIAKGAVDLGDLQDEAEKAEAEKAQETMKPVVDKLKAALGDRAKDVKVSTRLVDSPACLVVGEGELSPQMIQMLKQMG------QDVPESKPTLEVNPDHPLIKKLESSEQSAEDFDKLAQVIFDQALL 634          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_NOCFA (Chaperone protein htpG OS=Nocardia farcinica GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 70/223 (31.39%), Postives = 103/223 (46.19%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIK---DVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKND 664
            F+  F + LK G+  D  N+  + ++  + ST S  ELT+L  YV RM EGQ+ IYY+TGES++ VE+SP +E  K KG EVL + D +DE  VG + EF+GK+  S                              ++      L                P CLV   + +T  +ER+ +A      S      SK+ +E+NP +P++  LR   D  K D
Sbjct:  390 FWREFGRVLKEGLLSDFDNRETILQVSSFASTHSDSELTTLAQYVERMPEGQDAIYYMTGESRQQVESSPHMEAFKAKGREVLILTDPVDEMWVGSVPEFDGKRFQSIAKGEVDLESEEEKKASEALREQQDKEFADLLSWLGKTLEENIKEVRLTNRLTTSPACLVGDVFDFTPMLERMYRA------SGQPVPVSKRILELNPTHPLVTGLRDAYDQRKQD 606          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 67/215 (31.16%), Postives = 104/215 (48.37%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHST--KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELR 637
            F+  F + LK G+ ED +N+ ++A+LLR+ ST  +  ++  SL DY+ RMK  Q  IYYIT +  KA ++SP LE  +KKG EVL + D IDE+    L E+ GK L  ++                               +K+VLG               P CLV   +  + N+ R++K+   +         SK  +EINP +P+++ L+
Sbjct:  385 FWREFGQVLKEGVAEDYSNRERIAKLLRFTSTHDEQEEQTVSLDDYIARMKPEQEKIYYITADGLKAAQSSPHLEIFRKKGIEVLLLHDRIDEWLTANLNEYAGKSLQSIAKGDLDLGKLEDEVEKQEHEKEAGDFQELTAKMKEVLGELVKDVRITYRLTESPACLVADTHDMSGNLGRLLKSAGQK------VPDSKPFLEINPHHPMVQRLK 593          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_SHEPC2.468e-2333.64Chaperone protein htpG OS=Shewanella putrefaciens ... [more]
HTPG_SHEFN2.468e-2334.25Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_SHEB52.468e-2333.64Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_PSEU23.223e-2332.61Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_SACD24.210e-2331.08Chaperone protein htpG OS=Saccharophagus degradans... [more]
HTPG_MYCUA4.210e-2331.58Chaperone protein htpG OS=Mycobacterium ulcerans (... [more]
HTPG_PSYIN5.498e-2332.58Chaperone protein htpG OS=Psychromonas ingrahamii ... [more]
HTPG_PSYA25.498e-2330.08Chaperone protein htpG OS=Psychrobacter arcticus (... [more]
HTPG_NOCFA5.498e-2331.39Chaperone protein htpG OS=Nocardia farcinica GN=ht... [more]
HTPG_NITEC5.498e-2331.16Chaperone protein htpG OS=Nitrosomonas eutropha (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
back to top