FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTU (Chaperone protein htpG OS=Mycobacterium tuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 72/227 (31.72%), Postives = 107/227 (47.14%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDL 682
            F+  F + LK G+  D  N+  L  +  + ST S +E T+L +YV RMK+GQ  I+Y TGE+++ +  SP LE  K KGYEVL + D +DE  VG + EF+GK L S A                              +++ L                P CL+T  +G T  + RI +A      S       K+ +E+NP +P++  LR +A  D+ D + K L
Sbjct:  391 FWTQFGRVLKEGLLSDIDNRETLLGISSFVSTYSEEEPTTLAEYVERMKDGQQQIFYATGETRQQLLKSPHLEAFKAKGYEVLLLTDPVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLR-QAHQDRADDAEKSL 610          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MYCTA (Chaperone protein htpG OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 72/227 (31.72%), Postives = 107/227 (47.14%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDL 682
            F+  F + LK G+  D  N+  L  +  + ST S +E T+L +YV RMK+GQ  I+Y TGE+++ +  SP LE  K KGYEVL + D +DE  VG + EF+GK L S A                              +++ L                P CL+T  +G T  + RI +A      S       K+ +E+NP +P++  LR +A  D+ D + K L
Sbjct:  391 FWTQFGRVLKEGLLSDIDNRETLLGISSFVSTYSEEEPTTLAEYVERMKDGQQQIFYATGETRQQLLKSPHLEAFKAKGYEVLLLTDPVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLR-QAHQDRADDAEKSL 610          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBP (Chaperone protein htpG OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 72/227 (31.72%), Postives = 107/227 (47.14%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDL 682
            F+  F + LK G+  D  N+  L  +  + ST S +E T+L +YV RMK+GQ  I+Y TGE+++ +  SP LE  K KGYEVL + D +DE  VG + EF+GK L S A                              +++ L                P CL+T  +G T  + RI +A      S       K+ +E+NP +P++  LR +A  D+ D + K L
Sbjct:  391 FWTQFGRVLKEGLLSDIDNRETLLGISSFVSTYSEEEPTTLAEYVERMKDGQQQIFYATGETRQQLLKSPHLEAFKAKGYEVLLLTDPVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLR-QAHQDRADDAEKSL 610          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MYCBO (Chaperone protein htpG OS=Mycobacterium bovis GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 72/227 (31.72%), Postives = 107/227 (47.14%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDL 682
            F+  F + LK G+  D  N+  L  +  + ST S +E T+L +YV RMK+GQ  I+Y TGE+++ +  SP LE  K KGYEVL + D +DE  VG + EF+GK L S A                              +++ L                P CL+T  +G T  + RI +A      S       K+ +E+NP +P++  LR +A  D+ D + K L
Sbjct:  391 FWTQFGRVLKEGLLSDIDNRETLLGISSFVSTYSEEEPTTLAEYVERMKDGQQQIFYATGETRQQLLKSPHLEAFKAKGYEVLLLTDPVDEVWVGMVPEFDGKPLQSVAKGEVDLSSEEDTSEAEREERQKEFADLLTWLQETLSDHVKEVRLSTRLTESPACLITDAFGMTPALARIYRA------SGQEVPVGKRILELNPSHPLVTGLR-QAHQDRADDAEKSL 610          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_TREDE (Chaperone protein htpG OS=Treponema denticola GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 69/222 (31.08%), Postives = 110/222 (49.55%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK---SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT-XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            KF   F++ LK G++ D  ++ +LA+L+R+ +T      DE TS  DYV+RMK  Q  IYYITGE +K +  SP LE  K+KG+EVL M D ID+  +  L +++  +L +A                             + IK+VLG               P C+V  E   +  MER+M+A    + S     + K  +E+N ++P++++L+   D +
Sbjct:  385 KFIAEFNRPLKEGLYSDYEHREELADLVRFKTTSPEVKEDEWTSFADYVSRMKSDQKAIYYITGEDEKTLRQSPHLEVYKQKGFEVLIMPDEIDDIIIPSLGKYKDWELKAANRAGSDKELNTEEETKEAEKKEKDFKPVLEKIKEVLGDKVKEVRFSKRLSDSPSCIVVDETDPSLQMERMMRAMGQFNTS-----AVKPILEVNADHPLVQKLKDSKDKE 601          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_RHOSR (Chaperone protein htpG OS=Rhodococcus sp. (strain RHA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 66/223 (29.60%), Postives = 108/223 (48.43%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIK---DVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKND 664
            F+  F + +K G+  D+ N+  L  +  + ST S +ELTSL+DYV RMK+GQ  I+Y TGES++ +E+SP +E  + KG+EVL + D +DE  VG + EF+GK   S                              ++    D L                P C+V   +  +  +ER+ +A      S      +K+ +E+NP +P++  LR+ A  ++N+
Sbjct:  386 FWAEFGRAVKEGLMSDTDNRDVLLGISSFASTHSEEELTSLEDYVARMKDGQEQIFYATGESRQLLESSPHMEAFRAKGFEVLLLTDPVDEMWVGAVPEFDGKSFQSIAKGEVDLDTEEDKKAHESEREEQEKDFAGLLSWMADALSEQVKEVRLSTRLTTSPACIVGDAFSMSPALERMYRA------SGQPVPVTKRILELNPTHPLVTGLRE-AHGERNE 601          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 71/223 (31.84%), Postives = 112/223 (50.22%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKND 664
            F+ +F + LK G+ ED  N+ ++A+LLR+ ST    +    SL DYV+RMK  Q+ IYY+T ++ +A +NSP LE  +KKG EVL + D +DE+ +  L+EF+GK L S A                            + +K+ LG               P CLV  +   +  ++R++KA      +M      +  +EINPE+ ++++L K   AD  D
Sbjct:  381 FWGAFGQVLKEGLGEDHANRERIAKLLRFASTHGDTDAQDVSLADYVSRMKPEQSRIYYVTADAWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLQEFDGKPLASVARGDLDLGELNDEEKKAQEEAGEAIKPVVEKMKEALGDKVKEVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQNAPAM------QPILEINPEHALVKQL-KADSADFGD 596          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_VIBCM (Chaperone protein htpG OS=Vibrio cholerae serotype O1 (strain M66-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 72/220 (32.73%), Postives = 101/220 (45.91%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            KF++ F   +K G  ED  N+ K+A LLR+ ST   S ++  SL  YV RMKEGQ+ IYY+T +S  A +NSP LE+ K KG EV+ M D IDE+ +  L EFEGK   S T                            V  +K  LG               P  +VT +Y     M +++ A              K  +E+NPE+ +++ +   AD
Sbjct:  381 KFWKEFGLVMKEGPAEDFANREKIASLLRFASTHIDSAEQTISLASYVERMKEGQDKIYYLTADSYTAAKNSPHLEQFKSKGIEVILMFDRIDEWLMNYLPEFEGKAFQSITKAGLDLSQFEDEAEKEKHKETEEQFKSVVERLKGYLGSRVKEVRTTFKLANTPAVVVTDDYEMGTQMAKLLAAAG------QPVPEVKYILEVNPEHALVKRMADEAD 594          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_VIBCH (Chaperone protein htpG OS=Vibrio cholerae GN=htpG PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 72/220 (32.73%), Postives = 101/220 (45.91%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            KF++ F   +K G  ED  N+ K+A LLR+ ST   S ++  SL  YV RMKEGQ+ IYY+T +S  A +NSP LE+ K KG EV+ M D IDE+ +  L EFEGK   S T                            V  +K  LG               P  +VT +Y     M +++ A              K  +E+NPE+ +++ +   AD
Sbjct:  381 KFWKEFGLVMKEGPAEDFANREKIASLLRFASTHIDSAEQTISLASYVERMKEGQDKIYYLTADSYTAAKNSPHLEQFKSKGIEVILMFDRIDEWLMNYLPEFEGKAFQSITKAGLDLSQFEDEAEKEKHKETEEQFKSVVERLKGYLGSRVKEVRTTFKLANTPAVVVTDDYEMGTQMAKLLAAAG------QPVPEVKYILEVNPEHALVKRMADEAD 594          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_VIBC3 (Chaperone protein htpG OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 72/220 (32.73%), Postives = 101/220 (45.91%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            KF++ F   +K G  ED  N+ K+A LLR+ ST   S ++  SL  YV RMKEGQ+ IYY+T +S  A +NSP LE+ K KG EV+ M D IDE+ +  L EFEGK   S T                            V  +K  LG               P  +VT +Y     M +++ A              K  +E+NPE+ +++ +   AD
Sbjct:  381 KFWKEFGLVMKEGPAEDFANREKIASLLRFASTHIDSAEQTISLASYVERMKEGQDKIYYLTADSYTAAKNSPHLEQFKSKGIEVILMFDRIDEWLMNYLPEFEGKAFQSITKAGLDLSQFEDEAEKEKHKETEEQFKSVVERLKGYLGSRVKEVRTTFKLANTPAVVVTDDYEMGTQMAKLLAAAG------QPVPEVKYILEVNPEHALVKRMADEAD 594          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_MYCTU5.498e-2331.72Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCTA5.498e-2331.72Chaperone protein htpG OS=Mycobacterium tuberculos... [more]
HTPG_MYCBP5.498e-2331.72Chaperone protein htpG OS=Mycobacterium bovis (str... [more]
HTPG_MYCBO5.498e-2331.72Chaperone protein htpG OS=Mycobacterium bovis GN=h... [more]
HTPG_TREDE7.181e-2331.08Chaperone protein htpG OS=Treponema denticola GN=h... [more]
HTPG_RHOSR7.181e-2329.60Chaperone protein htpG OS=Rhodococcus sp. (strain ... [more]
HTPG_BURS37.181e-2331.84Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_VIBCM9.379e-2332.73Chaperone protein htpG OS=Vibrio cholerae serotype... [more]
HTPG_VIBCH9.379e-2332.73Chaperone protein htpG OS=Vibrio cholerae GN=htpG ... [more]
HTPG_VIBC39.379e-2332.73Chaperone protein htpG OS=Vibrio cholerae serotype... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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