FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.383e-43
Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G ELID  LD +R+ A+NC  LQGF V H              + ++  +Y  +  L FSV+P+P+VS +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +APL S     + A +V E+T   ++  N M   +PR
Sbjct:  105 RGHYTVGKELIDHVLDRIRRVADNCTGLQGFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPGYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPLISAAKAHHEANSVAEITNACFEPNNQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.112e-43
Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF   H              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.112e-43
Identity = 82/204 (40.20%), Postives = 124/204 (60.78%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD VRK A+ C  LQGF V H              + ++  +Y  +  L F V+PSP+VS  VVEPYN+ LS H L+E+ D   +LDNEA+YD+C ++L +  P++ +LN L++  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V ELT  +++  +MM   +PR
Sbjct:  105 RGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHGLLEHTDVAFMLDNEAIYDLCKKSLDIDRPSYANLNRLVAQVISSLTTSLRFDGALNVDINEFQTNLVPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.064e-43
Identity = 83/204 (40.69%), Postives = 126/204 (61.76%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  ++P+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.064e-43
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF V                + ++  +Y  +  L F+V+PSP+V+  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.064e-43
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF V                + ++  +Y  +  L F+V+PSP+V+  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYDICRRSLDIQRPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.055e-43
Identity = 84/204 (41.18%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+NC  LQGF +                + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  NMM   +PR
Sbjct:  105 RGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.055e-43
Identity = 83/204 (40.69%), Postives = 124/204 (60.78%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.055e-43
Identity = 81/204 (39.71%), Postives = 123/204 (60.29%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF V H              + ++  +Y  +  L+F++ P+P+V+  VVEPYN+ LS H L+E+ D    LDNEALYD+C R L +  PT+ +LN L++  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T  +++   MM   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.183e-42
Identity = 82/204 (40.20%), Postives = 123/204 (60.29%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF + +              + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 308          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA1_PNECA2.383e-4341.67Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA_EUPVA3.112e-4340.69Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBAN_PHYPO3.112e-4340.20Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_CHLVU4.064e-4340.69Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA1_NAEGR4.064e-4340.69Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR4.064e-4340.69Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA_PLAFK9.055e-4341.18Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_OXYGR9.055e-4340.69Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA2_PELFA9.055e-4339.71Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_TOXGO1.183e-4240.20Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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