FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.473e-54
Identity = 101/165 (61.21%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  170 IGQAGIQVGNSCWELYCLEHGIQPDGTMPSD-TSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            +GQAG Q+GN+CWELY LEHGI+PDG +    T      + F+TFF+ETGSG+ VPRAV+VDLEP+VIDEVRTG+YR+LFHPEQLISGKEDAANN+ARGHYTVGRE++D  LDR+RK++D C GLQGFL   ++                 +DYGKKSKL F +Y
Sbjct:   10 VGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVY 174          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.396e-54
Identity = 95/165 (57.58%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELY +EHG+ PDG + SD S     D F+TFFSET SG++VPR+++VDLEP+VIDEVR G YR LFHPE +I+GKEDAA+N+ARGHYT+G+E +D+ +D+VR+L DNC GLQGF VF +                   DYGKKSKL F++Y
Sbjct:    8 HVGQAGVQIGNACWELYTIEHGLSPDGRL-SDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVY 171          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.954e-53
Identity = 101/169 (59.76%), Postives = 123/169 (72.78%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMP----SDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG Q+GNS WELY LEHG+  DG +      D + G    +F TFF+ETGSG++VPR++FVDL+PS IDE+RTG YRQLFHPEQLISGKEDAANN+ARGHYTVG+E+VD  +DRVR+L+DNC+ LQGFLVF +                   +YGKKSKL F +Y
Sbjct:    9 HIGQAGTQLGNSAWELYLLEHGLGADGRLDPEKGEDINAGG---SFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVY 174          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.314e-52
Identity = 100/167 (59.88%), Postives = 124/167 (74.25%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPS--DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+GN+CWELY  EHGI+PDG +    D   G   + F+TFFSETGSG++VPRA++VDLEP+VIDEVRTG Y+ LFHPEQLI+GKEDAANN+ARGHYTVGREI+D  LDRVR+++D C GLQGFL   ++                 +DYGKKSKL F +Y
Sbjct:    8 NVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGG-EEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVY 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.314e-52
Identity = 92/165 (55.76%), Postives = 121/165 (73.33%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG+Q+GN+CWELY LEHG+ PDG +  D+   + HD+ +TFFSETG G+HVPR ++VDLEP VID+V+ G YR LFHPE +I+GKEDAANN+ARGHYTVG+E++D  +D++R+LADNC+G QG  VF +                   DYGKK+KL F +Y
Sbjct:    8 HVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSP--SKHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVY 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.700e-51
Identity = 98/166 (59.04%), Postives = 118/166 (71.08%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+GN+CWELY LEHGI+PDG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYTVGREI+   LDR+RKLAD C GLQGFL   ++                  +YGKKSKL F +Y
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVY 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.695e-50
Identity = 96/173 (55.49%), Postives = 123/173 (71.10%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDA--------FNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAGIQ+G++CWELYCLEHGIQP+G +  DT      +A        F+TFF ET +G+HVPRA+FVDLEP+VID +RTG +R LFHPEQL+SGKEDAANN+ARG Y+VG E++DL L+R RKLA+ C GLQGFL+F +                   +Y +K+KL F++Y
Sbjct:    8 HIGQAGIQIGDACWELYCLEHGIQPNGVV-LDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVY 179          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.075e-49
Identity = 95/166 (57.23%), Postives = 119/166 (71.69%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            ++GQAG Q+GN+CWELY LEHGI+ DG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVRTG +++LFHPEQLI+GKEDAANN+ARGHYTVGREIVD   +R+RK+AD C GLQGFL   ++                  +YGKKSKL F +Y
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVY 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.075e-49
Identity = 92/165 (55.76%), Postives = 118/165 (71.52%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            H+GQAG Q+GNS WELY LEHG+  DG    D++V     +++TFF+E+ +G++VPR++FVDL+PS IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTVG+E+ +  LDR+RK+ DNC  LQGFLVF +                   DY KK KL F++Y
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKKCKLEFSVY 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.395e-49
Identity = 87/165 (52.73%), Postives = 118/165 (71.52%), Query Frame = 2
Query:  167 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            HIGQAG Q+GN+CWELYC+EHG+   G +  +        +   FFSE+ +G+HVPRA++VDLEP+V+DE+R G Y  LFHP+Q+I+GKEDAANN+ARGHYT+G+E++D+ LDR+RK  +NC GLQGFLVF +                  V++GKKSKL F++Y
Sbjct:   12 HIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVY 175          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBA_ASHGO2.473e-5461.21Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBAA_SCHCO9.396e-5457.58Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA2_EMENI7.954e-5359.76Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_CANAL2.314e-5259.88Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBAB_SCHCO2.314e-5255.76Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_YEAST5.700e-5159.04Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBAL3_HUMAN3.695e-5055.49Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA3_YEAST1.075e-4957.23Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR1.075e-4955.76Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA8_CAEEL2.395e-4952.73Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
back to top