FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.547e-30
Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G + S++ +    D  N +++E   G++VPRAV +DLEP  +D V+TG + Q+F P+  I G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHG+ P G      +      +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVF 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHG+ P G      +      +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVF 173          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G    ++ +    +  N +++E   G++VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G+  WE+   EHGIQPDGT   +T +    +  + +++E  +G++VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+ C  LQGF
Sbjct:   10 GQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHG+ P G    D S     +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 171          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G    ++ +    +  N +++E   G+ VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:    1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 161          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G+  WE+ C EHGI P G     + V    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQV 135          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB2_DAUCA5.547e-3039.26Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB2_SOLTU1.614e-2937.80Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU1.614e-2937.80Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB6_ARATH2.108e-2938.04Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_CAEEL2.108e-2947.62Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB1_ARATH2.108e-2938.04Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ORYSJ6.133e-2938.65Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_PEA6.133e-2938.04Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB3_GOSHI6.133e-2938.65Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_MAIZE6.133e-2947.66Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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