FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.547e-30 Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + S++ + D N +++E G++VPRAV +DLEP +D V+TG + Q+F P+ I G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQL--DRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHG+ P G + + N +F+E G++VPRAV +DLEP +D +R+G Y Q+F P+ L+ G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVF 173
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACH-DAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHG+ P G + + N +F+E G++VPRAV +DLEP +D +R+G Y Q+F P+ L+ G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVF 173
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29 Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G ++ + + N +++E G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29 Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQ G Q+G+ WE+ EHGIQPDGT +T + + + +++E +G++VPRAV VDLEP +D VR+G + QLF P+ + G+ A NN+A+GHYT G E+VD LD +RK A+ C LQGF Sbjct: 10 GQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGF 133
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHG+ P G D S + N +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 171
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G ++ + + N +++E G+ VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQL--ERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 161
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29 Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556 GQ G Q+G+ WE+ C EHGI P G + V + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYMGTSDVQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQV 135 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |