FC920904
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29 Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550 GQ G Q+G WE+ EHG+QPDGT D+ + + N +++E G++VPRAV VDLEP +D +R G + QLF P+ + G+ A NN+A+GHYT G E+VD LD +RK A+ C LQGF Sbjct: 10 GQCGNQIGAKFWEVISDEHGVQPDGTYKGDSDLQI--ERINVYYNEANGGKYVPRAVLVDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGF 133
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G WE+ C EHGI P G ++ + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G WE+ C EHGI P G ++ + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G WE+ C EHGI P G D+ + + + +++E G+ VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G+ WE+ C EHGI P G + + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28 Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2 Query: 173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661 GQ G Q+G WE+ C EHGI P G T SD + + N +++E G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC LQGF V ++ +Y + L F+++ Sbjct: 10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQL----ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170 The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 403
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bpback to top |