FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.133e-29
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EHG+QPDGT   D+ +    +  N +++E   G++VPRAV VDLEP  +D +R G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +RK A+ C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHGVQPDGTYKGDSDLQI--ERINVYYNEANGGKYVPRAVLVDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G    ++ +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4_ORYSJ (Tubulin beta-4 chain OS=Oryza sativa subsp. japonica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G    ++ +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G    D+ +    +  + +++E   G+ VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI P G     + +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G  T  SD  +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQL----ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB1_BRUPA6.133e-2946.83Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB6_MAIZE8.009e-2938.65Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]
TBB5_WHEAT8.009e-2938.65Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_MAIZE8.009e-2938.65Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ORYSJ8.009e-2938.65Tubulin beta-4 chain OS=Oryza sativa subsp. japoni... [more]
TBB4_ELEIN8.009e-2938.65Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB1_WHEAT8.009e-2938.65Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_PEA8.009e-2937.42Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB1_ORYSJ8.009e-2938.65Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB_HORVU1.046e-2840.00Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
back to top