FC920904

Overview
NameFC920904
Unique NameFC920904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLV 556
            GQ G Q+G+  WE+ C EHG+ P G    D S     +  + +++E   G++VPRAV +DLEP  +D +R+G   Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V
Sbjct:   10 GQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQV 137          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_WHEAT (Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G  T  SD  +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQL----ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_ELEIN (Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDG--TMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G  T  SD  +    +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCDEHGIDPTGRYTGTSDLQL----ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.046e-28
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI P G    D+ +    +  N +++E   G+ VPRAV +DLEP  +D +R+G Y Q F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI   G    D+ +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  ++ L F+++
Sbjct:   10 GQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQL--ERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRTMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EHGI P GT   D+ +    +  N +++E   G++VPRAV VDLEP  +D VR+G +RQ+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGF 550
            GQ G Q+G   WE+   EHGI P GT   D+ +    D  N +++E   G++VPRAV VDLEP  +D VR+G++ Q+F P+  + G+  A NN+A+GHYT G E+VD  LD VRK A++C  LQGF
Sbjct:   10 GQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--DRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 61/163 (37.42%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G+  WE+ C EHGI   G    DT+     +  N +++E   G++VPRAV +DLEP  +D +R+G + Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGSKFWEVICDEHGIDSTGRYSGDTA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 171          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI   G    D+ +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
BLAST of FC920904 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  173 GQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIY 661
            GQ G Q+G   WE+ C EHGI   G    D+ +    +  N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC  LQGF V  ++                  +Y  +  L F+++
Sbjct:   10 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVF 170          
The following BLAST results are available for this feature:
BLAST of FC920904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBB6_GOSHI1.046e-2844.53Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB2_WHEAT1.046e-2840.00Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2... [more]
TBB2_ELEIN1.046e-2840.00Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 P... [more]
TBB2_ARATH1.046e-2838.04Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB9_GOSHI1.366e-2838.04Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB3_CHICK1.366e-2847.62Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB1_GADMO1.366e-2847.62Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB5_ARATH1.784e-2837.42Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_SOYBN1.784e-2838.04Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB3_ORYSJ1.784e-2838.04Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32014F03EF RVDevelop1 Citrus clementina cDNA clone C32014F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920904 ID=FC920904; Name=FC920904; organism=Citrus clementina; type=EST; length=663bp
CGCCTTTATGTATCACGTTCAGGAATAACAAAGCAACGGGGAAAAAAAAA
AGCTTCTCTTGGTTTCTCTTCTCCTCATTATCTGTAAGTAATTGATCATA
AATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAAGAGAGATGAG
GGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAGGTTGGGAATT
CATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCCTGATGGAACC
ATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTTTCAATACATT
CTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCAGTATTTGTTG
ATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTCTTATAGACAA
CTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATGCTGCCAATAA
CTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTTGATCTCTGCC
TTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTTGCAAGGATTT
CTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGTTCTTT
ACTTTTGGGACGCTTATCGGTTGATTATGGAAAGAAGTCAAAACTCGGCT
TTACTATCTACCC
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