FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_SODGM (Low affinity potassium transport system protein kup OS=Sodalis glossinidius (strain morsitans) GN=kup PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 63/226 (27.88%), Postives = 106/226 (46.90%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  P ++IIHTS    GQIYIP INW L +  + + V F  + ++  A G+AV   M++T+ L   V    WH +             ++   F+A+ +K   G W+P+ L F+  +AM  W            ++  S+  +++       VRV G  +  +  ++ IP    H + +    H+ VV L +++   P V    R  +
Sbjct:  301 SQAVISGVFSLTRQAVRLGYMPPMRIIHTSEMEVGQIYIPFINWLLYIAVVLVIVSFEHSSNLAAAYGIAVTGTMVLTSILSCTVARKNWHLNLLIVSVLLLALLCLDVSMFAANALKIFSGGWLPLLLGFLMFIAMITWKSERFLLLRRIHEHGNSLEALIASLEKSPPVRVPGTAVFMSRAMNVIPFALLHNLKHNKVLHERVVLLTLRTEDAPFVHNVRRVTI 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_GRABC (Probable potassium transport system protein kup OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=kup PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 64/226 (28.32%), Postives = 112/226 (49.56%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +QC  LG  PR+ + HTS    GQIY+P++N  L++  LA+ + FR + ++  A G+AV    L T  L  +V    +  S             +++L+F+++++K  +G +VP+ L  + +  M  W  G         Q+ + +   L+  P   I+RV G  +  T     +P    H + +    H+ V+FL +K++  P   PD+   V
Sbjct:  319 SQAMISGAFSMARQCVQLGFLPRMTVRHTSETEQGQIYVPQVNSALLIGVLALVLTFRTSDNLAAAYGIAVTGTFLCTGILAVVVFRRQFGWSRRSVMVVFGFFFLLDSLFFASNMLKIPQGGYVPLVLGGLLMAMMTSWSAGRRLLMSRWRQDSLPLASFLARLPQSRILRVPGTAVFLTGNPDYVPGALLHNLKHNKVLHERVLFLTVKTLDQPEAGPDQHLEV 544          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BORA1 (Probable potassium transport system protein kup OS=Bordetella avium (strain 197N) GN=kup PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 64/229 (27.95%), Postives = 111/229 (48.47%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG---SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG +PR++I+HTS+   GQIY+P++N  L+   L + + FR+++++  A G AV   ML+T+ L     VL    +           G    ++ L FSA++ K  EG W+P+ +  +    M  W  G     +   +++  +   +    +    RV G  +  T     +P    H + +    H  V+FL I+   VP++   +RF V
Sbjct:  302 SQAVISGAFSVTRQAVQLGFWPRMQILHTSAVEKGQIYLPQVNALLLCAVLVLVITFRNSENLAAAYGFAVTGTMLMTSIL--AFAVLPRGSTGAKRLGWMLVLGVLLIIDVLLFSANIFKIHEGGWMPLLVGVVVFTLMMTWRRGRQLLADIQARDRQPLQEFMDQLESYPPARVPGTAVFMTLNNDNVPPALLHNLKHNKVLHDHVLFLSIRVADVPYIAEQDRFSV 528          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP3_RHOPA (Probable potassium transport system protein kup 3 OS=Rhodopseudomonas palustris GN=kup3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.036e-22
Identity = 67/227 (29.52%), Postives = 110/227 (48.46%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGT----LKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  FS+I Q   LG  PR ++ +TS    GQIY+P +N  L++  L + + F+ +  + +A G+AV T M+V   +  +VI   W  S             V+A++FSA+L+K L+GAWVP+       V ++ W  G     +K    +V     I  +    P++    V+G  +  T     +P    H + +    H+  V L I+++  P V   +R
Sbjct:  330 SQAVITGAFSLISQAVQLGLLPRFEVRYTSETNAGQIYLPRVNALLLIGVLLLVLLFQTSSRLASAYGIAVSTTMVVDGIMGFVVIWKLWRWSWPAAALVILPLVLVDAMFFSANLLKLLDGAWVPLLFGLAMAVVIWTWRRGVALLMIKSRRAEVPLDDLIGSLEKHPPHI----VKGTAVFLTADAEFVPPALLHNLKHNKVLHEHNVILTIETMHTPRVEAADR 552          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_PSEF5 (Probable potassium transport system protein kup OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=kup PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 67/230 (29.13%), Postives = 111/230 (48.26%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG----TLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  PR+ I HTSS   GQIYI  +NW+LM+  + + +GF  +  + +A G+AV   ML+T+ L++ V++L W                V+ L+F+A++ K  +G   P+    +  + M  W  G      +  E  +   + I+ I    P+    RV+G  +  T     +P    H + +    H+ VV L +    +P V  + RF V
Sbjct:  312 SQAVISGAFSLTRQAIQLGYIPRMHIQHTSSAEQGQIYIGAVNWSLMVGVILLVLGFESSGALASAYGVAVTGTMLITSILVAAVMLLLWKWPPVLAVPVLLGFLLVDGLFFAANVPKIFQGGAFPVLAGIVLFILMTTWKRGKELLVDRLDEGGLPLPIFISSIRVQPPH----RVQGTAVFLTARPDAVPHALLHNLLHNQVLHEQVVLLTVVYEDIPRVPANRRFEV 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_POLNA (Probable potassium transport system protein kup OS=Polaromonas naphthalenivorans (strain CJ2) GN=kup PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 68/229 (29.69%), Postives = 106/229 (46.29%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTL---KKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  FS+ KQ   +G  PR++I+HTS +  GQIY+P +NW L +  +   V FR + ++  A G+AV T ML+TT L   VI   W                V+  +F+++L+K   G W P+ +       M  W  G     +K   D  +  S    + + P L   RV G  +  T     +P    H + +    H   +F+ + +  VP +  D+R  V
Sbjct:  301 SQALITGAFSVTKQAIQMGYLPRLRILHTSVRDTGQIYMPFVNWGLFVTIVLAVVMFRSSSNLAAAYGIAVCTDMLITTILTFYVIRYGWKYPLALCIAATSVFFLVDFAFFASNLMKLFAGGWFPLVIGGAVFTLMITWKQGRQILNEKLRTDAIDLSSFLDAVFVSPPL---RVEGTAVFMTAEPGIVPNAMLHNLKHNKVLHDQNLFVTVVNHEVPWIGMDKRLQV 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_RHILO (Probable potassium transport system protein kup 2 OS=Rhizobium loti GN=kup2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 63/227 (27.75%), Postives = 112/227 (49.34%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINW----ILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+ +Q   L   PR+++ HTS    GQIY+P IN  + L  + + VGF  +  + +A G++V   ML+TT L+ +V+   W              G +++ +F A+++K  EG WV I ++ +  + M+ W  GT   ++   +N++ +++    +L   P+L    V G  +  T      P    H + +    H+  V L + + P P V   +R
Sbjct:  316 SQAVISGAFSLTRQAVQLNLLPRIEVQHTSEMQLGQIYMPRINLLVALGVMLLVVGFGSSSSLASAYGISVTGEMLMTTILLFVVMRKLWKWRLAVALPLTLLFGIIDSGFFLANIVKIFEGGWVSITVACLMGLIMWTWIRGTRYLFDKTRRNEIPLDFLAANLLKKKPHL----VPGTAVFLTSDPLSAPTALMHSLKHYKVLHEQNVILSVVTAPQPVVSDSDR 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPH (Probable potassium transport system protein kup 1 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup1 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 65/225 (28.89%), Postives = 110/225 (48.89%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIH-TELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQA+I+ATFS+ KQ   LG  P++ I+ TS    GQIY+P+IN+ L +  +A  + F+ + ++ +A G+AV   ML+   +++   V  W  S             ++  +  A+  KF+ G WVPI L+F     MY W YG     +    NK  I+ IL       + ++ G+  I  T++       F HF+    +  + V+ +      +P+V   +R+
Sbjct:  295 SQAVISATFSLTKQAVLLGLCPKIPIVQTSMLHSGQIYVPQINFILFIGTMAFCLAFKTSDNLAHAYGIAVNLEMLLVDAMVAYAAVSIWRWSTFNVIFLFGLFLLIDLAFLGANTHKFITGGWVPIVLAFFIAFIMYSWRYGLEYLRDNFYMNKEDISKILKQLQYKSLNQLPGVSAIFITDVYDKSGGSFLHFLKLNRSVPENVLIVNYIVDNIPYVHYSQRY 519          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPA (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 65/225 (28.89%), Postives = 110/225 (48.89%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIH-TELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQA+I+ATFS+ KQ   LG  P++ I+ TS    GQIY+P+IN+ L +  +A  + F+ + ++ +A G+AV   ML+   +++   V  W  S             ++  +  A+  KF+ G WVPI L+F     MY W YG     +    NK  I+ IL       + ++ G+  I  T++       F HF+    +  + V+ +      +P+V   +R+
Sbjct:  295 SQAVISATFSLTKQAVLLGLCPKIPIVQTSMLHSGQIYVPQINFILFIGTMAFCLAFKTSDNLAHAYGIAVNLEMLLVDAMVAYAAVSIWRWSTFNVIFLFGLFLLIDLAFLGANTHKFITGGWVPIVLAFFIAFIMYSWRYGLEYLRDNFYMNKEDISKILKQLQYKSLNQLPGVSAIFITDVYDKSGGSFLHFLKLNRSVPENVLIVNYIVDNIPYVHYSQRY 519          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_SALTY (Low affinity potassium transport system protein kup OS=Salmonella typhimurium GN=kup PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 63/218 (28.90%), Postives = 104/218 (47.71%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHV 657
            SQA+I+  FS+ +Q   LG    ++IIHTS    GQIYIP +NW L    + + V F  + ++  A G+AV   M++T+ L + V    WH +             V+   FSA+L K L G W+P++L  I    M  W     +      ++  S+  +++       VRV G  +  +  +S IP    H + +    H+ V+ L +++   P+V
Sbjct:  301 SQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRALSVIPFALLHNLKHNKVLHERVILLTLRTEDAPYV 518          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_SODGM1.559e-2227.88Low affinity potassium transport system protein ku... [more]
KUP_GRABC1.559e-2228.32Probable potassium transport system protein kup OS... [more]
KUP_BORA11.559e-2227.95Probable potassium transport system protein kup OS... [more]
KUP3_RHOPA2.036e-2229.52Probable potassium transport system protein kup 3 ... [more]
KUP_PSEF52.659e-2229.13Probable potassium transport system protein kup OS... [more]
KUP_POLNA2.659e-2229.69Probable potassium transport system protein kup OS... [more]
KUP2_RHILO2.659e-2227.75Probable potassium transport system protein kup 2 ... [more]
KUP1_LEGPH2.659e-2228.89Probable potassium transport system protein kup 1 ... [more]
KUP1_LEGPA2.659e-2228.89Probable potassium transport system protein kup 1 ... [more]
KUP_SALTY3.473e-2228.90Low affinity potassium transport system protein ku... [more]

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Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
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