FC920917

Overview
NameFC920917
Unique NameFC920917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10223 contig Ccv1_Contig10223:9..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920917 vs. ExPASy Swiss-Prot
Match: KATG_LEPBP (Catalase-peroxidase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=katG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 68/239 (28.45%), Postives = 91/239 (38.08%), Query Frame = 1 
Query:  166 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHL--------------------------------RQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE------------------------------------RSGFEGPWTRNPLIFDNSYFTEL 648
            P  +R+AWHSAGTY +    GG   G  R     +   N  LD A RLL P K+++   IS+ADL  L G V +E  G     F  GR D  E       P++  L D + +GN  L                                R+ FG +M ++D++ VAL +GGHT G+ H +                                     SG EG WT NP  +   Y   L
Sbjct:  102 PFFIRMAWHSAGTYRISDGRGGAGGGQQRFEPLNSWPDNANLDKARRLLWPIKKKYGKKISWADLMVLTGNVALESMGFKTYGFAGGRTDDWEADLVYWGPEKKFLEDQRYKGNRELKNPLAAVQMGLIYVNPEGPNGNPDPLAAAKDIRETFG-RMAMNDEETVALIAGGHTFGKAHGKSDPSKHVGKEPAAAGLEEQGFGWKNNYKKGNAEDTITSGLEGAWTANPTKWTTQYLNNL 339
[Close]
BLAST of FC920917 vs. ExPASy Swiss-Prot
Match: KATG_LEPBA (Catalase-peroxidase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=katG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 68/239 (28.45%), Postives = 91/239 (38.08%), Query Frame = 1 
Query:  166 PLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHL--------------------------------RQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE------------------------------------RSGFEGPWTRNPLIFDNSYFTEL 648
            P  +R+AWHSAGTY +    GG   G  R     +   N  LD A RLL P K+++   IS+ADL  L G V +E  G     F  GR D  E       P++  L D + +GN  L                                R+ FG +M ++D++ VAL +GGHT G+ H +                                     SG EG WT NP  +   Y   L
Sbjct:  102 PFFIRMAWHSAGTYRISDGRGGAGGGQQRFEPLNSWPDNANLDKARRLLWPIKKKYGKKISWADLMVLTGNVALESMGFKTYGFAGGRTDDWEADLVYWGPEKKFLEDQRYKGNRELKNPLAAVQMGLIYVNPEGPNGNPDPLAAAKDIRETFG-RMAMNDEETVALIAGGHTFGKAHGKSDPSKHVGKEPAAAGLEEQGFGWKNNYKKGNAEDTITSGLEGAWTANPTKWTTQYLNNL 339
The following BLAST results are available for this feature:
BLAST of FC920917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
KATG_LEPBP6.575e-1128.45Catalase-peroxidase OS=Leptospira biflexa serovar ... [more]
KATG_LEPBA6.575e-1128.45Catalase-peroxidase OS=Leptospira biflexa serovar ... [more]

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Properties
Property NameValue
Genbank descriptionC32014G07EF RVDevelop1 Citrus clementina cDNA clone C32014G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920917 ID=FC920917; Name=FC920917; organism=Citrus clementina; type=EST; length=705bp
GCTCGTGCCACTTTCGTTTGTTAAGGATTTGCGTCTCTCTTTCTCATTTC
ATTCAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAGCGAGGATT
ACAAGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCTTCATCGCT
GAGAAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCACTCAGCTGG
TACATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAACCATGAGGC
TCGCTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATATTGCCGTT
AGGCTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCCTACGCTGA
CCTTTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCG
ATATCCCCTTCCACCCTGGAAGAGATGACAAGGCTGAGCCACCTCAAGAA
GGCCGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGGCAAGTCTT
TGGTGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCTCTCTGGTG
GCCACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTGAGGGACCA
TGGACCCGCAACCCTCTCATTTTTGACAATTCCTACTTCACGGAGCTCTT
GACTGGTGAGAAGGATGGTCTTCTGCAATTGCCATCCGACAGGNCCTTCT
GGATG
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