FC920918

Overview
NameFC920918
Unique NameFC920918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 5.671e-53
Identity = 93/158 (58.86%), Postives = 118/158 (74.68%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            ++GQAG Q+ NSCWELYCLEHGIQPDG +  +         F+TFFSETG G++VPR ++ DLEP+V+DEVRTG+YR LFHPE LI+GKEDA+NN+ARGHYTVG+E++D  LD+VR++AD+C+GLQGFLVF +                  VDYGKKS
Sbjct:    8 NVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKS 165          

HSP 2 Score: 23.483 bits (49), Expect = 5.671e-53
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQ +T
Sbjct:  163 KKSKLEFCVYPAPQNAT 179          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 8.033e-52
Identity = 97/162 (59.88%), Postives = 118/162 (72.84%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMP----SDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAG Q+GNS WELY LEHG+  DG +      D + G    +F TFF+ETGSG++VPR++FVDL+PS IDE+RTG YRQLFHPEQLISGKEDAANN+ARGHYTVG+E+VD  +DRVR+L+DNC+ LQGFLVF +                   +YGKKS
Sbjct:    9 HIGQAGTQLGNSAWELYLLEHGLGADGRLDPEKGEDINAGG---SFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGHYTVGKELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKS 167          

HSP 2 Score: 27.335 bits (59), Expect = 8.033e-52
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YPSP+VST
Sbjct:  165 KKSKLEFAVYPSPRVST 181          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.779e-51
Identity = 96/160 (60.00%), Postives = 119/160 (74.38%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPS--DTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            ++GQAG Q+GN+CWELY  EHGI+PDG +    D   G   + F+TFFSETGSG++VPRA++VDLEP+VIDEVRTG Y+ LFHPEQLI+GKEDAANN+ARGHYTVGREI+D  LDRVR+++D C GLQGFL   ++                 +DYGKKS
Sbjct:    8 NVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGG-EEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKS 166          

HSP 2 Score: 27.7202 bits (60), Expect = 1.779e-51
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQVST
Sbjct:  164 KKSKLEFAVYPAPQVST 180          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.180e-51
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELY +EHG+ PDG + SD S     D F+TFFSET SG++VPR+++VDLEP+VIDEVR G YR LFHPE +I+GKEDAA+N+ARGHYT+G+E +D+ +D+VR+L DNC GLQGF VF +                   DYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYTIEHGLSPDGRL-SDDSPSKHDDGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGHYTIGKEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKS 164          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.696e-51
Identity = 88/158 (55.70%), Postives = 116/158 (73.42%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELY LEHG+ PDG +  D+   + HD+ +TFFSETG G+HVPR ++VDLEP VID+V+ G YR LFHPE +I+GKEDAANN+ARGHYTVG+E++D  +D++R+LADNC+G QG  VF +                   DYGKK+
Sbjct:    8 HVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSP--SKHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKA 163          

HSP 2 Score: 25.409 bits (54), Expect = 6.696e-51
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQ+S+
Sbjct:  161 KKAKLEFCVYPAPQLSS 177          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.281e-50
Identity = 94/159 (59.12%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            ++GQAG Q+GN+CWELY LEHGI+PDG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVR G Y+ LFHPEQLISGKEDAANN+ARGHYTVGREI+   LDR+RKLAD C GLQGFL   ++                  +YGKKS
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKS 166          

HSP 2 Score: 27.7202 bits (60), Expect = 4.281e-50
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQVST
Sbjct:  164 KKSKLEFAVYPAPQVST 180          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 3.566e-49
Identity = 90/139 (64.75%), Postives = 111/139 (79.86%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDA--------FNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVF 569
            HIGQAGIQ+G++CWELYCLEHGIQP+G +  DT      +A        F+TFF ET +G+HVPRA+FVDLEP+VID +RTG +R LFHPEQL+SGKEDAANN+ARG Y+VG E++DL L+R RKLA+ C GLQGFL+F
Sbjct:    8 HIGQAGIQIGDACWELYCLEHGIQPNGVV-LDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIF 145          

HSP 2 Score: 26.1794 bits (56), Expect = 3.566e-49
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  623 LIG*LWKEVKLGFTIYPSPQVST 691
            L G   ++ KL F++YP+P++ST
Sbjct:  164 LTGEYSRKTKLEFSVYPAPRIST 186          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.748e-48
Identity = 83/158 (52.53%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAG Q+GN+CWELYC+EHG+   G +  +        +   FFSE+ +G+HVPRA++VDLEP+V+DE+R G Y  LFHP+Q+I+GKEDAANN+ARGHYT+G+E++D+ LDR+RK  +NC GLQGFLVF +                  V++GKKS
Sbjct:   12 HIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKS 168          

HSP 2 Score: 28.1054 bits (61), Expect = 1.748e-48
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F++YP+PQVST
Sbjct:  166 KKSKLEFSVYPAPQVST 182          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.748e-48
Identity = 91/159 (57.23%), Postives = 114/159 (71.70%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVG-ACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            ++GQAG Q+GN+CWELY LEHGI+ DG +    S      + F+TFF ETG G+ VPRA++VDLEP+VIDEVRTG +++LFHPEQLI+GKEDAANN+ARGHYTVGREIVD   +R+RK+AD C GLQGFL   ++                  +YGKKS
Sbjct:    8 NVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKS 166          

HSP 2 Score: 26.5646 bits (57), Expect = 1.748e-48
Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQ+ST
Sbjct:  164 KKSKLEFAVYPAPQLST 180          
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 2.970e-48
Identity = 88/157 (56.05%), Postives = 112/157 (71.34%), Query Frame = 3
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKK 647
            H+GQAG Q+GNS WELY LEHG+  DG    D++V     +++TFF+E+ +G++VPR++FVDL+PS IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTVG+E+ +  LDR+RK+ DNC  LQGFLVF +                   DY KK
Sbjct:    9 HLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGHYTVGKEMAENVLDRIRKITDNCHSLQGFLVFHSFGGGTGSGFGALVLERLAQDYAKK 165          

HSP 2 Score: 25.7942 bits (55), Expect = 2.970e-48
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F++YP+P+V+T
Sbjct:  164 KKCKLEFSVYPAPRVAT 180          
The following BLAST results are available for this feature:
BLAST of FC920918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
TBA1_EMENI5.671e-5358.86Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA2_EMENI8.033e-5259.88Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_CANAL1.779e-5160.00Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBAA_SCHCO6.180e-5157.59Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBAB_SCHCO6.696e-5155.70Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA1_YEAST4.281e-5059.12Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBAL3_HUMAN3.566e-4964.75Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA8_CAEEL1.748e-4852.53Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA3_YEAST1.748e-4857.23Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR2.970e-4856.05Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]

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Properties
Property NameValue
Genbank descriptionC32014G08EF RVDevelop1 Citrus clementina cDNA clone C32014G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920918 ID=FC920918; Name=FC920918; organism=Citrus clementina; type=EST; length=691bp
AGGAATTTTCGCCTTTATGTATCCACGTTCAGTAATAACAAAGCAACGGG
GAAAAAAAAAAGCTTCTCTTGGTTTCTCTTCTTTTCATTATCTGTAAGTA
ATTGATCATAAATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAA
GAGAGATGAGGGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAG
GTTGGGAATTCATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCC
TGATGGAACCATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTT
TCAATACATTCTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCA
GTATTTGTTGATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTC
TTATAGACAACTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATG
CTGCCAATAACTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTT
GATCTCTGCCTTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTT
GCAAGGATTTCTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTT
TGGGTTCTTTACTTTTGGAACGCTTATCGGTTGATTATGGAAAGAAGTCA
AACTCGGCTTTACTATCTACCCATCTCCTCAGGTTTCAACT
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