FC920918
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 3.211e-69 Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAGIQVGN+CWEL+CLEHGIQPDG MPS+ ++G DAFNTFFSETG+G+HVPR VF+DL P+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLD +RKLAD CTGLQGFLVF++V VDYGKKS
Sbjct: 8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKS 165 HSP 2 Score: 34.2686 bits (77), Expect = 3.211e-69 Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KLGFTIYPSPQVST
Sbjct: 163 KKSKLGFTIYPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 4.187e-69 Identity = 117/158 (74.05%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
HIGQ GIQVGN+CW+L+CLEHGIQPDG MPSD ++G DAFNTFFSETG+G+HVPRAVF+DLEP+V DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGF+ F +V VDYGKKS
Sbjct: 8 HIGQGGIQVGNACWDLFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVCDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKS 165 HSP 2 Score: 31.187 bits (69), Expect = 4.187e-69 Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL FTIYPSPQVST
Sbjct: 163 KKSKLTFTIYPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 1.579e-68 Identity = 118/158 (74.68%), Postives = 134/158 (84.81%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAGIQVGN+CWEL+CLEHGIQPDG MPSD + A DAFNTFFSETG+G+HVPR VFVDLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+E++D+CLDR+RKLADNCTGLQGFL+FSAV VDYGKKS
Sbjct: 8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKS 165 HSP 2 Score: 25.7942 bits (55), Expect = 1.579e-68 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F +PSPQVST
Sbjct: 163 KKSKLNFCCWPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 2.686e-68 Identity = 118/158 (74.68%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
HIGQAG QVGN+CWELYCLEHGI+PDG MPSD SVG DAFNTFFSET SG+HVPRA+F+DLEP+VIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+E+VDLCLDRVRKLAD C+GLQGFLVF +V VDYGKKS
Sbjct: 8 HIGQAGAQVGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKS 165 HSP 2 Score: 28.8758 bits (63), Expect = 2.686e-68 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F +YPSPQVST
Sbjct: 163 KKSKLDFCVYPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 4.567e-68 Identity = 116/158 (73.42%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+G+EI+DL LDRVRKLAD CTGLQGFLVF + VDYGKKS
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165 HSP 2 Score: 28.4906 bits (62), Expect = 4.567e-68 Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F+IYP+PQVST
Sbjct: 163 KKSKLEFSIYPAPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2) HSP 1 Score: 250.751 bits (639), Expect = 4.567e-68 Identity = 118/158 (74.68%), Postives = 131/158 (82.91%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
HIGQAG QVGN+CWELYCLEHGI PDG MPSD SVG DAFNTFFSET SG+HVPRA+++DLEP+VIDE+RTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+EIVDLCLDRVRKLAD C+GLQGFLVF +V VDYGKKS
Sbjct: 8 HIGQAGAQVGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKS 165 HSP 2 Score: 28.8758 bits (63), Expect = 4.567e-68 Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F +YPSPQVST
Sbjct: 163 KKSKLDFCVYPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 7.766e-68 Identity = 117/158 (74.05%), Postives = 133/158 (84.18%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAGIQVGN+CWEL+CLEHGIQPDG MP D + A DAFNTFFSETG+G+HVPR VFVDLEP+V+DEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+E++D+CLDR+RKLADNCTGLQGFL+FSAV VDYGKKS
Sbjct: 8 HVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKS 165 HSP 2 Score: 25.7942 bits (55), Expect = 7.766e-68 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F +PSPQVST
Sbjct: 163 KKSKLNFCCWPSPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.321e-67 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGFLVF + VDYGKKS
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165 HSP 2 Score: 28.4906 bits (62), Expect = 1.321e-67 Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F+IYP+PQVST
Sbjct: 163 KKSKLEFSIYPAPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.321e-67 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGFLVF + VDYGKKS
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165 HSP 2 Score: 28.4906 bits (62), Expect = 1.321e-67 Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F+IYP+PQVST
Sbjct: 163 KKSKLEFSIYPAPQVST 179
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.321e-67 Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3
Query: 177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EI+DL LDR+RKLAD CTGLQGFLVF + VDYGKKS
Sbjct: 8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKS 165 HSP 2 Score: 28.4906 bits (62), Expect = 1.321e-67 Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 641 KEVKLGFTIYPSPQVST 691
K+ KL F+IYP+PQVST
Sbjct: 163 KKSKLEFSIYPAPQVST 179 The following BLAST results are available for this feature:
BLAST of FC920918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 401
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920918 ID=FC920918; Name=FC920918; organism=Citrus clementina; type=EST; length=691bpback to top |