FC920918 | Citrus Genome Database

Overview


Name	FC920918
Unique Name	FC920918
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	691

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14214	contig	Ccv1_Contig14214:1..692.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.722e-67
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD +VG   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 165

HSP 2 Score: 28.1054 bits (61), Expect = 1.722e-67
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQVST
Sbjct:  163 KKSKLEFAIYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.246e-67
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD +VG   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 165

HSP 2 Score: 27.7202 bits (60), Expect = 2.246e-67
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQVST
Sbjct:  163 KKSKLEFAVYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.246e-67
Identity = 115/158 (72.78%), Postives = 130/158 (82.28%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQ GIQVGN+CWEL+CLEHGIQPDG MPSD ++G   DAFNTFFSETG+G+HVPRAV VDLEP+V DE+RTG+YRQLFHPEQ+ISGKEDAANNFARGHYT+G+EIVDL LDR+RKLADNCTGLQGF+ F +V                 VDYGKKS
Sbjct:    8 HIGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 30.4166 bits (67), Expect = 2.246e-67
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL FT+YPSPQVST
Sbjct:  163 KKSKLCFTVYPSPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.929e-67
Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+E++DL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 165

HSP 2 Score: 28.4906 bits (62), Expect = 2.929e-67
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F+IYP+PQVST
Sbjct:  163 KKSKLEFSIYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.929e-67
Identity = 113/158 (71.52%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETGSG+HVPRAV+VDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGTGDDSFNTFFSETGSGKHVPRAVYVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKS 165

HSP 2 Score: 27.7202 bits (60), Expect = 2.929e-67
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F +YP+PQVST
Sbjct:  163 KKSKLEFAVYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.819e-67
Identity = 114/158 (72.15%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYTVG+EI+DL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKS 165

HSP 2 Score: 27.7202 bits (60), Expect = 3.819e-67
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQ+ST
Sbjct:  163 KKSKLEFAIYPAPQIST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.819e-67
Identity = 113/158 (71.52%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDRVRKL+D CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKS 165

HSP 2 Score: 28.1054 bits (61), Expect = 3.819e-67
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQVST
Sbjct:  163 KKSKLEFAIYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.981e-67
Identity = 113/158 (71.52%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKS 165

HSP 2 Score: 28.1054 bits (61), Expect = 4.981e-67
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQVST
Sbjct:  163 KKSKLEFAIYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.981e-67
Identity = 113/158 (71.52%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKS 165

HSP 2 Score: 28.1054 bits (61), Expect = 4.981e-67
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQVST
Sbjct:  163 KKSKLEFAIYPAPQVST 179

[Close]

BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.981e-67
Identity = 113/158 (71.52%), Postives = 132/158 (83.54%), Query Frame = 3

Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            H+GQAG+Q+GN+CWELYCLEHGIQPDG MPSD ++G   D+FNTFFSETG+G+HVPRAVFVDLEP+V+DEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVDL LDR+RKLAD CTGLQGFL+F +                  VDYGKKS
Sbjct:    8 HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKS 165

HSP 2 Score: 28.1054 bits (61), Expect = 4.981e-67
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 2

Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KL F IYP+PQVST
Sbjct:  163 KKSKLEFAIYPAPQVST 179

The following BLAST results are available for this feature:

BLAST of FC920918 vs. ExPASy Swiss-Prot

BLAST of FC920918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401


Match Name	E-value	Identity	Description
TBA1_DROME	1.722e-67	72.15	Tubulin alpha-1 chain OS=Drosophila melanogaster G...	[more]
TBA3_DROME	2.246e-67	72.15	Tubulin alpha-3 chain OS=Drosophila melanogaster G...	[more]
TBA_EUPVA	2.246e-67	72.78	Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1	[more]
TBA1D_BOVIN	2.929e-67	70.89	Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=...	[more]
TBA_LEPDS	2.929e-67	71.52	Tubulin alpha chain OS=Lepidoglyphus destructor PE...	[more]
TBA2_PATVU	3.819e-67	72.15	Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G...	[more]
TBAT_ONCMY	3.819e-67	71.52	Tubulin alpha chain, testis-specific OS=Oncorhynch...	[more]
TBA3_RAT	4.981e-67	71.52	Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba...	[more]
TBA3_MOUSE	4.981e-67	71.52	Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE...	[more]
TBA3_BOVIN	4.981e-67	71.52	Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32014G08EF RVDevelop1 Citrus clementina cDNA clone C32014G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920918 ID=FC920918; Name=FC920918; organism=Citrus clementina; type=EST; length=691bp
AGGAATTTTCGCCTTTATGTATCCACGTTCAGTAATAACAAAGCAACGGG
GAAAAAAAAAAGCTTCTCTTGGTTTCTCTTCTTTTCATTATCTGTAAGTA
ATTGATCATAAATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAA
GAGAGATGAGGGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAG
GTTGGGAATTCATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCC
TGATGGAACCATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTT
TCAATACATTCTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCA
GTATTTGTTGATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTC
TTATAGACAACTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATG
CTGCCAATAACTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTT
GATCTCTGCCTTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTT
GCAAGGATTTCTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTT
TGGGTTCTTTACTTTTGGAACGCTTATCGGTTGATTATGGAAAGAAGTCA
AACTCGGCTTTACTATCTACCCATCTCCTCAGGTTTCAACT