FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920926_ssr674 microsatellite FC920926_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N++    Q   ++    +L + E SAK++ N  + F+ +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 61/184 (33.15%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +   NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ FL  AR +   PN   +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI---PNK--IESGELDP 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 58/184 (31.52%), Postives = 100/184 (54.35%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIG+E            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI ++LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKI-----LNKIESGELDP 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G+ GTGK+  + + +   F+     TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES  L P
Sbjct:    3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 594
            FK ++VGD   GK+  + + +   F    + TIGVE        N  +I+   WDTAGQEKF  +   YY     A+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +   F  K  L ++E SAK+  N    FEK    + +KL  +P L
Sbjct:   25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP-PEVQID 642
            +Q+  DY  +K+V++GD G GK+  + R    EF  + + TIGVE       T    I+   WDTAGQE++  +   YY     A++++D+  + TYK+V  W  +L    + NI I+L GNK D+++ R+V   +   F  K  L + E SA  + N E  F  +  ++      H +  P+ +  P+  ID
Sbjct:    6 SQEEYDY-LYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI-----YHIMSRPSHSTGPQTTID 192          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  100 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT---------------FHRKKNLQYYEISAKSNYNFEKPF 555
            S KLV+VGDG  GKT  +  + T EF K Y PT+  + + +       +I+   WDTAGQE++  LR   Y      +I F VT+ ++Y NV T WH ++      +PI+L G K+D +N     K++T                +R K ++Y E SAK++ N +  F
Sbjct:    7 SIKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTV-FDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVF 173          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            +T D+  FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P
Sbjct:    3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_BOVIN6.237e-1933.54Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB4B_DANRE6.237e-1933.15Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB4A_MOUSE6.237e-1931.52Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB4A_DANRE6.237e-1932.61Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB2B_DICDI6.237e-1934.88Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RB11A_DICDI8.146e-1931.61Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RACC_ENTHI8.146e-1933.93Rho-related protein racC OS=Entamoeba histolytica ... [more]
RAB4B_RAT8.146e-1931.52Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE8.146e-1931.52Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN8.146e-1931.52Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
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