FC920926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19 Identity = 54/161 (33.54%), Postives = 88/161 (54.66%), Query Frame = 1 Query: 103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576 FKLV++G+ GK++ V R + G+F + E TIG + ++F WDTAGQE++ L YY Q AI+++D+T ++ W ++L R NI I L GNK D+ N++ Q ++ +L + E SAK++ N + F+ +A+KL Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19 Identity = 61/184 (33.15%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY + W D + NI I+LCGNK D+ +R+V + + F ++ L + E SA + N E+ FL AR + PN +ES L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI---PNK--IESGELDP 180
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19 Identity = 58/184 (31.52%), Postives = 100/184 (54.35%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G+ GTGK+ + + + +F+ TIG+E ++ WDTAGQE+F + YY A++++D+T+R TY + W D + +NI ++LCGNK D+ +R+V + + F ++ L + E SA + N E+ F+ ARK+ L+ +ES L P Sbjct: 3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKI-----LNKIESGELDP 180
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19 Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G+ GTGK+ + + + F+ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY + W D + +NI I+LCGNK D+ +R+V + + F ++ L + E SA + N E+ F+ ARK+ L+ +ES L P Sbjct: 3 ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDP 180
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19 Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = 1 Query: 103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDPNL 594 FK ++VGD GK+ + + + F + TIGVE N +I+ WDTAGQEKF + YY A+I++D+T R +++++ +W D CR ++ VL GNK D++ NRQV + F K L ++E SAK+ N FEK + +KL +P L Sbjct: 25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGL 195
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP-PEVQID 642 +Q+ DY +K+V++GD G GK+ + R EF + + TIGVE T I+ WDTAGQE++ + YY A++++D+ + TYK+V W +L + NI I+L GNK D+++ R+V + F K L + E SA + N E F + ++ H + P+ + P+ ID Sbjct: 6 SQEEYDY-LYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQI-----YHIMSRPSHSTGPQTTID 192
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 57/168 (33.93%), Postives = 86/168 (51.19%), Query Frame = 1 Query: 100 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT---------------FHRKKNLQYYEISAKSNYNFEKPF 555 S KLV+VGDG GKT + + T EF K Y PT+ + + + +I+ WDTAGQE++ LR Y +I F VT+ ++Y NV T WH ++ +PI+L G K+D +N K++T +R K ++Y E SAK++ N + F Sbjct: 7 SIKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTV-FDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVF 173
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19 Identity = 58/184 (31.52%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624 +T D+ FK +++G GTGK+ + + + +F++ TIGVE ++ WDTAGQE+F + YY A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L + E SA + N E+ FL AR + L+ ++S L P Sbjct: 3 ETYDF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDP 180 The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bpback to top |