FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLA 567
            KL++VGD G GK+  + R +  +F   +  TIG++       +   +I+   WDTAGQE+F  +   YY      ++++DVT   +++NV  W + + +   E+  I L GNK D + NRQV  +Q      K N+ + E SAKSN N +  F  LA
Sbjct:   16 KLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELA 172          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB27B_RAT (Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 549
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D +  R+V  +Q      K  + Y+E SA +  N EK
Sbjct:   11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLLDQREVNERQARELAEKYGIPYFETSAATGQNVEK 172          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 56/184 (30.43%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLA-RKLAGDPNL---HFVESPALAPPE 630
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +           ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+VL GNK+D+ +R+V  +    + R+K++ Y+E+SAK++ N  + F  LA R L+   ++   H  ES  L+P +
Sbjct:   10 KLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTESIKLSPDQ 193          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 57/184 (30.98%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 630
            K+VI+G+   GKT+ ++R++   F    +PTIGV+        +   +    WDT+GQE+F  L   YY    + I++FDVT   T  ++  W  D     E       P ++ GNK+D  NR V  K      K     NL Y++ SAK N N E+ F +++ +    P  + +      PPE
Sbjct:    9 KVVIIGEKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQPQSNEI------PPE 181          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 633
            FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+      ++ I+L GNK D+ + RQV   +     K+ N+ + E SAK+ YN ++ F  +A  L G      ++   + PP V
Sbjct:   11 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPG-----IIKDDPVEPPNV 185          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 57/182 (31.32%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   67 ALPNQ--QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLA 579
            A P Q  Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      F    +++   WDTAGQE++  +   YY      I+M+D+T   ++ +V  W   +     EN  +VL GNK D+ + +V    + +Q+    +  L+++E SAK N N    FEK    +  K+A
Sbjct:   10 ATPGQPDQNFDY-MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLA--DQLGLEFFETSAKENINVKAVFEKLVEIICDKMA 188          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 48/165 (29.09%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 555
            + Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 48/165 (29.09%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 555
            + Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 48/165 (29.09%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 555
            + Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 48/165 (29.09%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   76 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 555
            + Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_CANAL2.620e-1734.39Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RB27B_RAT2.620e-1733.33Ras-related protein Rab-27B OS=Rattus norvegicus G... [more]
RAB7B_HUMAN2.620e-1730.43Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RAB7B_DICDI2.620e-1730.98Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAB6B_CAEEL2.620e-1730.00Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RAB3_CAEEL2.620e-1731.32Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3A_RAT2.620e-1729.09Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG2.620e-1729.09Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE2.620e-1729.09Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA2.620e-1729.09Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
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