FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  ++V        F     + + E SAK+  N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  ++V        F     + + E SAK+  N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 50/157 (31.85%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 564
            FKL+++GD G GKT  + R     F   +  TI ++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++ +   E++  +L  NK D+ +++V  K K     R+  ++++E SAK+N N EK FL L
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTL 166          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+    +    F ++  L + E SA++ +N E+ F+  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 49/161 (30.43%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R+    +    F ++  L + E SA++ +N E+ F+  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEI 167          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPF 555
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W ++L      NI ++L GNK D+  R + A Q      F  +++L + E SA  + N E  F
Sbjct:   15 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDL--RHLVAVQTDEGKAFAERESLYFMETSALESTNVENAF 168          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB32A_DICDI (Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 59/165 (35.76%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDV-KNRQVK-AKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYL 564
            +K+++VGD GTGKT+ +KR +   F   Y+ TIGV+    +  +    ++R   WD AGQE+FG +   YY     A+I FDVT   T++ V  W  D+          + IP+VL  NK D+ K+  +K A  +  + K N  + ++E SAK N N EK   +L
Sbjct:   16 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFL 180          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 570
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y      ++++DV    +++N+  W  +          EN P V+ GNK+DV    +R V  K+       K N+ Y+E SAK  +N +  F  +A+
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 52/161 (32.30%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R+ VK ++   F R+  L + E SAK+  N E+ ++  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEI 167          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  ++V        F     + + E SAK+  N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI 169          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_HUMAN3.422e-1731.68Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN3.422e-1731.68Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB10_RAT3.422e-1731.85Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPTV4_VOLCA4.470e-1730.43GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE4.470e-1730.43GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RIC2_ORYSJ4.470e-1733.33Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB32A_DICDI4.470e-1735.76Ras-related protein Rab-32A OS=Dictyostelium disco... [more]
RAB7_PRUAR4.470e-1729.70Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB2B_MOUSE4.470e-1732.30Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB1B_MOUSE4.470e-1731.68Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
back to top