FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14398 contig Ccv1_Contig14398:81..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.328e-71
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL +TMD + L+++K+E+A
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.328e-71
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL +TMD + L+++K+E+A
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.346e-71
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL +TMD + L+++K+E+A
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.346e-71
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL +TMD + L+++K+E+A
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.414e-71
Identity = 130/214 (60.75%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDP+GNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL +TMD + L+++K+E+A
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.468e-66
Identity = 127/213 (59.62%), Postives = 158/213 (74.18%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            M+RRYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GILS +G+V+  E+K   KLL  S  TEK+Y++ D+++C VAGI +DANILIN  R  A  Y  +Y E MPVEQLVQ+LC+ KQ YTQ GG RPFGVS L+ GWDK+YG+QLY SDPSGNY GWK            ++LKQ+YK   + EEA QLA+KVL +T+D   L S+K+E+A
Sbjct:    1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLAIKVLWKTLD-VKLASEKVEMA 211          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.223e-66
Identity = 121/217 (55.76%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            M+RRYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GIL++DG++L  E + T+KLL ++  +EK+Y+++D++ C+VAGI SDAN+L +  R+ AQRY ++Y E +P EQLV  LCD KQ YTQ+GG RPFGVS L+ GWD  YG+QLY SDPSGNYGGWK            S+LKQ+  D     ++  +A  LA+KVL  T+D+T LT +K+E+A
Sbjct:    1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMA 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.830e-54
Identity = 107/219 (48.86%), Postives = 147/219 (67.12%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            M+R +DSRTTIFSPEGRLYQVEYAMEA   +G+ +G+L+K+GV+L  E+ V  KL+ TS    ++  +++++AC   G  +D N+L+N  R+ AQ+Y + + E +P EQLV +LCD KQ YTQ+GG RPFGVSFL+ GWD  +GFQLY SDPSGNY GWK             +L+++         S EEA  +A+KV+  T+   SLT +KLE+A V
Sbjct:    1 MARFFDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSV-DKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMGMTLGRDSLTPEKLEIAFV 218          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.172e-46
Identity = 93/211 (44.08%), Postives = 142/211 (67.30%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ Y   Y EP PV  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ Y+DD++ E+A++LAL  L +TM++ S  +D +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPD-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAG--INDRPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPS--ADNIEVAVI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.705e-46
Identity = 92/211 (43.60%), Postives = 143/211 (67.77%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L +T++    T++ +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA4_HUMAN3.328e-7161.21Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN3.328e-7161.21Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT4.346e-7161.21Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE4.346e-7161.21Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA4_MACFA7.414e-7160.75Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA4_CAEEL2.468e-6659.62Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_DROME3.223e-6655.76Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSA4L_DROME2.830e-5448.86Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSMA_PYRFU2.172e-4644.08Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_THEK13.705e-4643.60Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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