FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 66/142 (46.48%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            KG S S  P + TPP W+    ++++  I + +KKG  PS IG+ILRD  G+  VK + G K+++I++  G+AP IPEDL+HL+K+AV +R HL  + KDK S   L+ +ES+I RL +YYK+  KLPP WKY+   A  LV
Sbjct:    7 KGKSHSKRPVRNTPPRWVPFGPEEIKALIVELSKKGYGPSMIGIILRDQFGVPLVKPIVGKKLVKIMEEQGVAPPIPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYDPERARLLV 148          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METLZ (30S ribosomal protein S15P/S13e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps15p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 67/151 (44.37%), Postives = 102/151 (67.55%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            M RMH+R +GI++S  PY++  P+W     +++E  I +  K GLT +QIG++LRD HG+  VK  TG +I  I++ + L  +IPEDL +L+ KA+ +RKHLE+NRKD  +K +L L E+++ RL +YY  TK+LP  W Y+  TA  L++
Sbjct:    1 MARMHARRRGIASSVRPYRKEVPAWSNSDVKEIEGKIVELRKAGLTCAQIGLVLRDKHGVPNVKLATGKRINAIVRENDLDTDIPEDLRNLMHKALMMRKHLEQNRKDLHNKRQLQLTEAKVRRLVKYYVGTKRLPLGWVYKPETAEILLS 151          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 68/145 (46.90%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R KG S S  P +   P W++++ ++VE  + + AK+G TPS IG+ILRD +GI  VK + G K+ +IL+  GLAP+IPEDL++LI+KAV +R+H+    +DK +K  L  +ES+I RL RYYK   KLP  W Y+   A  LVA
Sbjct:    5 RAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVA 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRAB (30S ribosomal protein S15P/S13e OS=Pyrococcus abyssi GN=rps15p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RMH+R +G S S  P +  PP WL+ + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LIK+AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+   A  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R  G S S  P +   P W++ + ++VE  + + AKKG +PS IG+ILRD +GI  VK +TG K+ +IL+  GLAP+IPEDL++LI+KA  +R+HL  + KDK +K  L  +ES+I RLA YYK+  KLP  WKYE   A  L +
Sbjct:    5 RPNGKSHSTRPVRSGAPKWVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYKRIGKLPKEWKYEPEKAELLAS 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRIL (30S ribosomal protein S15P/S13e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 69/141 (48.94%), Postives = 94/141 (66.67%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTL 529
            KG S S  P   T P+W++ +  +VE  + + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  EIPEDL +LIK+A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLP  + Y     S L
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPDEVEQLVVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIRQEIPEDLLNLIKRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKLPKEFVYNPEALSHL 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_PYRFU (30S ribosomal protein S15P/S13e OS=Pyrococcus furiosus GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 72/157 (45.86%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RMH+R +G S S  P +  PP W++ + +++E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+  TA  LV
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLV 157          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METMA (30S ribosomal protein S15P/S13e OS=Methanosarcina mazei GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 68/150 (45.33%), Postives = 96/150 (64.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M +MH++ KG S+S  P +  PP W KI + +V        K+G++ S+IG+ILRD +G+   K VTG KI  ILK + +AP +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPNRTEPPEWCKIGADEVTTITLDLWKQGVSTSEIGMILRDRYGVPDAKLVTGKKITTILKENNVAPNLPEDLTNLIVKALGLRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METAC (30S ribosomal protein S15P/S13e OS=Methanosarcina acetivorans GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 65/150 (43.33%), Postives = 97/150 (64.67%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M +MH++ KG S+S  P +  PP W KI + +V   +    K+G++ ++IG++LRD +G+   K +TG K+  ILK + +AP IPEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKVLPRDWFYKPETAEMMI 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_ARCFU (30S ribosomal protein S15P/S13e OS=Archaeoglobus fulgidus GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 505
            M R+H+R +G S S   Y+ +PP W+ +S ++VE  + +   +G  PS IG+ILRD +GI  VK VTG KI +ILK HG+  + PEDL  LIKKA+ +R HLE +RKDK ++  L L+E++I RL+ YYK+   LP  WKY
Sbjct:    1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_IGNH45.711e-3346.4830S ribosomal protein S15P/S13e OS=Ignicoccus hosp... [more]
RS15_METLZ7.458e-3344.3730S ribosomal protein S15P/S13e OS=Methanocorpuscu... [more]
RS15_SULSO3.701e-3246.9030S ribosomal protein S15P/S13e OS=Sulfolobus solf... [more]
RS15_PYRAB3.701e-3247.1330S ribosomal protein S15P/S13e OS=Pyrococcus abys... [more]
RS15_SULTO8.246e-3247.5930S ribosomal protein S15P/S13e OS=Sulfolobus toko... [more]
RS15_PYRIL8.246e-3248.9430S ribosomal protein S15P/S13e OS=Pyrobaculum isl... [more]
RS15_PYRFU8.246e-3245.8630S ribosomal protein S15P/S13e OS=Pyrococcus furi... [more]
RS15_METMA8.246e-3245.3330S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_METAC1.077e-3143.3330S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_ARCFU1.077e-3148.2330S ribosomal protein S15P/S13e OS=Archaeoglobus f... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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