FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METM5 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 65/150 (43.33%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M R+HS  +G S S  P +   P W+ +S++++E  I + AK G   + IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEEIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_SULAC (30S ribosomal protein S15P/S13e OS=Sulfolobus acidocaldarius GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            R KG S S  P +  PP W++ + ++VE  + + AK+G  PS IG++LRD +G+  VK +TG K+  IL+   + P+IPEDL++L+++AV IR+HL    KDK +K  L  VES+I RLA YYK+T KLP  W Y+   A  LV
Sbjct:    5 RAKGNSHSIRPVRSGPPKWVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLV 148          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METS5 (30S ribosomal protein S15P/S13e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R  G S S  P +   P W++ S ++VE  I + AKKG TPS IG++LRD +GI   K + G K+ + LK  GLA +IPEDL++LI++AV +R+HL     DK +K  L  +ES+I RL+RYYK+ +KLP  W Y+   A  LV+
Sbjct:    5 RANGSSHSTRPVRTGSPKWVRFSREEVEMLIEELAKKGYTPSMIGIVLRDQYGIPLAKPIIGKKVNQFLKDKGLASQIPEDLFNLIRRAVNVRRHLNEYPGDKTAKKGLEEIESKIRRLSRYYKRVEKLPQDWTYDPAKAELLVS 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  107 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 505
            +G S S  P  +T P WL  S +DVE  + + A++G TPS IGVILRD +GI  VK VT  +I  IL+ +GL P+IPEDL  LI++AV IR+HLE + KD  +K  L+L ES+IHRL +YYK+T  LP  + Y
Sbjct:    9 RGSSGSVRPATKTIPPWLSYSPEDVERLVVELARRGFTPSLIGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYKRTGVLPLDFTY 141          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METMJ (30S ribosomal protein S15P/S13e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 61/150 (40.67%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M RM++R +G S+S  PY++  P W    + ++E  +    K G++ SQIG++LRD + +  VK  TG +I  IL+  GL  EIPEDL +L++KA+ IRKHL  N KD  +K +L + ES++ RL +YY ++ ++P  W Y+  TA  L+
Sbjct:    1 MARMYARRRGTSSSVRPYRKEAPEWSNTDATEIEKIVVDLRKDGMSTSQIGLVLRDRYAVPDVKLATGKRIGEILREKGLESEIPEDLRNLMEKALGIRKHLAENNKDVHNKRQLQIAESKVRRLVKYYVRSGRMPKGWTYKPETAEILL 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_AERPE (30S ribosomal protein S15P/S13e OS=Aeropyrum pernix GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R KG S S  P    PP WL  + +++E  I + AKKG  PS IG+ILRD +GI  VK + G  +  +L+  GL P +PEDL  LI+KAV +R+HL+ + KD  +K  LI +ES+I RL +YYK+   LPP WKY+   A  LV+
Sbjct:    5 REKGQSHSTRPPHPQPPQWLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYGIPLVKPILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLESKIRRLVKYYKRRGVLPPDWKYDPEAAKLLVS 149          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METBF (30S ribosomal protein S15P/S13e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 63/150 (42.00%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M +MH++ KG S+S  P +  PP W KI +++V        K+G++ ++IG+ LRD +G+   K +TG KI  ILK + + P +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YY++ K LP  W Y+  TA  ++
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTEPPEWCKIGAEEVTTITLDLWKQGVSTAEIGMTLRDRYGVPDAKLITGKKITTILKENNVYPNVPEDLTNLIVKALRLRKHLSVNKKDVHNKRALNLTESKIRRLVKYYQQEKVLPRDWFYKPETAEMMI 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 2
Query:  101 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 535
            R KG S S  P   T P W++   +++E+ I   A+KG  PS IG+ILRD  GI  VK + G  I  +L+  G+   +PEDL+ LI+KAV +R+HLE + KD  +K  L+ +ES+I RLA YYK+  KLP  WKY+   A  LVA
Sbjct:    6 RKKGRSHSTRPATPTVPKWIQYDPEEIEEIIVDLARKGYGPSMIGIILRDQFGIPLVKPILGKSITEVLEERGIKMVVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_METBU (30S ribosomal protein S15P/S13e OS=Methanococcoides burtonii (strain DSM 6242) GN=rps15p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 532
            M +MH+R KG S S  P +   P+W   +++++   +    K+G + S IG++LRD++G+  VK  TG K+  IL+ +   P +PEDLY+LI KA+ +RKHL  N KD  +K  L   ES+I RL +YY+ TK LP  WKY+  TA  L+
Sbjct:    1 MAKMHTRTKGKSGSTKPIRSESPAWSTATTEEITKVVLDLWKQGNSTSVIGMVLRDNYGVPDVKLATGKKVTEILRDNSEEPNVPEDLYNLIVKAIGLRKHLVVNNKDVHNKRSLQSAESKIRRLVKYYQSTKVLPIDWKYKPETAEMLI 150          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS13_ENCCU (40S ribosomal protein S13 OS=Encephalitozoon cuniculi GN=RPS13 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 60/140 (42.86%), Postives = 86/140 (61.43%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 502
            M +MHS GKG S S  PY    P+WL  S  +++ ++ +   KG+    IG  LRD +GI +   V G  I R L+ +G+ P+IP DL  L+ +A  +R HL   RKD  +K+RLILV SR++R+ARYYK+  ++P  WK
Sbjct:    1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGIGKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSSRMYRVARYYKRKMRIPGNWK 140          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METM59.117e-3143.3330S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_SULAC1.555e-3045.8330S ribosomal protein S15P/S13e OS=Sulfolobus acid... [more]
RS15_METS52.031e-3045.5230S ribosomal protein S15P/S13e OS=Metallosphaera ... [more]
RS15_CALMQ2.031e-3051.1330S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]
RS15_METMJ7.718e-3040.6730S ribosomal protein S15P/S13e OS=Methanoculleus ... [more]
RS15_AERPE7.718e-3046.2130S ribosomal protein S15P/S13e OS=Aeropyrum perni... [more]
RS15_METBF1.008e-2942.0030S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_HYPBU1.316e-2945.5230S ribosomal protein S15P/S13e OS=Hyperthermus bu... [more]
RS15_METBU1.719e-2942.0030S ribosomal protein S15P/S13e OS=Methanococcoide... [more]
RS13_ENCCU8.533e-2942.8640S ribosomal protein S13 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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