FC920954

Overview
NameFC920954
Unique NameFC920954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10215 contig Ccv1_Contig10215:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_NATPD (30S ribosomal protein S15P/S13e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps15p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 481
            M RMHSR +G S S  P    PP W ++    +ED + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+ +    E+PEDL +L+++A+ +R+H++RN  D  +K  L   ES+I RL  YY+  K
Sbjct:    1 MARMHSRRRGSSGSDRPTADEPPEWSEVDEDAIEDRVVELAEEGYDPSQIGLKLRDEGVQGVPVPDVKLATGKKVTEILEENDAENELPEDLRNLMERAIRLREHMDRNPGDAQNKRALQNTESKIRRLVDYYRGDK 137          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_THEVO (30S ribosomal protein S15P/S13e OS=Thermoplasma volcanium GN=rps15p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 499
            M RMH+R +G S S   Y    P+W++ S  ++ +      K G+T S +G+ LRD +G+  VK++ G K+ ++L   G+  EIPEDL  LIK+   + KH+E N KD  +K    L+ +++ RL RYYK+T  L   W
Sbjct:    1 MARMHTRKRGKSGSKKVYG-VEPNWVQYSKDEILNIAVDLKKSGMTSSVVGIRLRDQYGVPTVKAIFGKKLNKLLAEKGIRDEIPEDLNSLIKRYNNVAKHVELNPKDHSNKRGRDLIMAKMLRLVRYYKRTGVLDQKW 138          
BLAST of FC920954 vs. ExPASy Swiss-Prot
Match: RS15_HALMA (30S ribosomal protein S15P/S13e OS=Haloarcula marismortui GN=rps15p PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   83 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 472
            M RMH+R +G S S  P    PP W  +    +E  + + A++G +PS+IG+ LRD       I  V   TG K+  IL+ +   P++PEDL +L+++AV +R H++ N  D  +K  L   +S+I RL  YY+
Sbjct:    1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYR 134          
The following BLAST results are available for this feature:
BLAST of FC920954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_NATPD7.736e-2239.4230S ribosomal protein S15P/S13e OS=Natronomonas ph... [more]
RS15_THEVO8.553e-2138.1330S ribosomal protein S15P/S13e OS=Thermoplasma vo... [more]
RS15_HALMA1.783e-1836.5730S ribosomal protein S15P/S13e OS=Haloarcula mari... [more]

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Properties
Property NameValue
Genbank descriptionC32201C07EF RVDevelopN Citrus clementina cDNA clone C32201C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920954 ID=FC920954; Name=FC920954; organism=Citrus clementina; type=EST; length=682bp
GAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAACACA
AAGCTCACCGCTTCTCCTCCGTCGCCGTCACCATGGGTCGTATGCACAGT
CGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACCACC
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGCTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATACCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATACTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGAATTAGTCTT
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