FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 58/142 (40.85%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   94 DEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            D  PKT ENF  LC              +Y   +FHR +K FM+Q             SI+G  F DE   ++KHN   +LSMAN G +TNGSQFFI+    PHL+G + V G+VI G EV+  +E  +T +  +P AE+RI
Sbjct:   31 DVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 171          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 58/142 (40.85%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   94 DEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            D  PKT ENF  LC              +Y   +FHR +K FM+Q             SI+G  F DE   ++KHN   +LSMAN G +TNGSQFFI+    PHL+G + V G+VI G EV+  +E  +T +  +P AE+RI
Sbjct:   31 DVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 171          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            G I   +  D VP+TAENF ALC    G+ Y    FHR I  FM Q             SI+G+KF+DE    L+H   G+LSMANSGPNTNGSQFFI   K   L+G + V GRV+ G  V+  ME   + SG
Sbjct:  126 GRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSG 258          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            G I   +  D VP+TAENF ALC    G+ Y    FHR I  FM Q             SI+G+KF+DE    L+H   G+LSMANSGPNTNGSQFFI   K   L+G + V GRV+ G  V+  ME   + SG
Sbjct:   32 GRIVMELRSDIVPRTAENFRALCTGDRGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSG 164          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   94 DEV-PKTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            DEV PKTAENF ALC             ++ G+ FHR I  FM Q             SI+G+KF DE    LKH+  G+LSMAN+GPNTNGSQFF+++   P L+G + V G V+ G E+L+ +E   + SG
Sbjct:   25 DEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADE-NFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSG 156          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I  G+    VPKTA NF+ L        Y G+ FHR I  FMIQ             SI+G+KF DE    LKH   G LSMAN+G +TNGSQFFI+  K P L+G + V G+++ G +V+  +E+ +   GDRP  ++ I
Sbjct:   42 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII 184          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 61/135 (45.19%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + V G V  G +V+  +E   + SG
Sbjct:   58 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 191          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 61/135 (45.19%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + V G V  G +V+  +E   + SG
Sbjct:   58 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 191          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 61/135 (45.19%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D VPKTAENF ALC    G+ Y G+ FHR I  FM Q             SI+G +F DE   +LKH   G+LSMAN+GPNTNGSQFFI   K   L+G + V G V  G +V+  +E   + SG
Sbjct:   59 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSG 192          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   61 NLGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            ++G +  G+    VPKT +NF+AL     G+ Y  + FHR IK FMIQ             SI+G++F DE    LKH   G +SMAN+G +TNGSQFFI+  K   L+G + V G+V+ G EV+  +E  +T S D+PL ++ I
Sbjct:   56 DVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 199          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIG_MOUSE1.041e-1940.85Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN1.041e-1940.85Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPIE_SCHMA1.041e-1946.27Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIE_SCHJA1.041e-1946.27Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPI2_SYNY31.041e-1944.36Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CYP5_CAEEL1.041e-1941.67Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIF_RAT1.359e-1945.19Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE1.359e-1945.19Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_HUMAN1.359e-1945.19Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_HUMAN1.359e-1941.38Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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