FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CWC27_ASPFU (Peptidyl-prolyl isomerase cwc27 OS=Aspergillus fumigatus GN=cwc27 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKK----------------FNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAK-QPHLNGLYTVLGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRI 483
            S TLHT  G I   +  ++ P T +NFL  C   YY GTIFHR +  F++Q            SI+                     DE+   L+ N RG++ MA S   T GSQFFI+ A  +  LNG  T+ GRV     + VL + E  +    +RP+  +++
Sbjct:   14 SATLHTTFGPIHIALFANQTPLTCKNFLQHCLDNYYAGTIFHRIVPDFIVQGGDPTGTGSGGTSIYEYPEFEYDPEARDPNEKVVLRDELHSRLRFNRRGLVGMAKSEDGTYGSQFFITLANAERELNGQCTLFGRVEGDSIYNVLKIAEAERVERTERPVYPVKV 179          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 55/116 (47.41%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRV 402
            G I   +  D VPKTAENF AL     G+ Y G+ FHR I  FM+Q             SI+G+KF DE    LKH+  G+LSMAN+G NTNGSQFFI+    P L+G + V G V
Sbjct:   17 GRITFNLFDDVVPKTAENFRALATGEKGFGYAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADE-NFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEV 131          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRP 465
            G I   +  D VPKT +NF+ L     Y G+ FHR I  FMIQ             SI+G +F DE   +LKH+ RG++SMAN+GPNTNGSQFFI+  K   L+G + V G++ +         +A   SG RP
Sbjct:   37 GRIVLELRGDVVPKTVKNFIGLFDK--YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDE-NFTLKHD-RGVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRP 166          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 58/150 (38.67%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   25 GVGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVI--HGFEVLDLMEKAQTGSG 456
            G   K +  +    G I   +  D VPKTA NF  LC   +G+ Y G+ FHR I  FM+Q             SI+G+KF DE   + KH   G+LSMAN+GPNTNGSQFF++      L+G + V G V      +V+  +E   + SG
Sbjct:   59 GPNNKPTSEIKAQSGRINFTLYDDVVPKTARNFKELCTGQNGFGYKGSSFHRIIPEFMLQGGDFTRGNGTGGKSIYGEKFADE-NFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSG 207          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.118e-16
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 516
            +G +   + CD  PKT +NF  LC             +Y  +IFHR ++   IQ             SI+G  F DE   S+ HN RG+L MAN G ++NGSQF+I+    P+L+  +   G++I G EVL  +E   T   +RP   I + R+T   +P A
Sbjct:  155 IGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDE-NFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPT-QNERP---IHMCRITDSGDPYA 311          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL4_ASPOR (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 59/175 (33.71%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ----XXXXXXXXXXXXSIWG-------KKFNDEIRESLKHNARGILSMA------NSGPNTNGSQFFISYAKQ-PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            MSV L T+LGDI   +  DE PK  ENFL LC   YY+ +  H   K F  Q                SIWG       + F+ E    LKH+ RG +SMA      +       SQF ++  +   +L+G   + G+V+ GF+VL+ + +A      RPL +IRI    I  +P
Sbjct:    1 MSVLLETSLGDIVIDLLVDECPKACENFLKLCKVKYYNFSPVHSVQKNFTFQTGDPLGPDSSESDGGSSIWGLLEGPPKRTFSLEPPPKLKHDERGTVSMATVPSPHDPDQRIAASQFIVTLGENLDYLDGKAVIFGKVVEGFDVLEKVNEAFIDDRGRPLKDIRIRHTVILDDP 175          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 53/146 (36.30%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASGY----YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPH-LNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I  G+     PKTA+NF  L  +      + G+ FHR I  FM+Q             SI+G  F DE   +LKH+ +G LSMAN G +TNGSQFFI+  ++   L+G + V G+V+ G +V++ ++     + D+PL  ++I
Sbjct:   49 VGRIVIGLYGKVCPKTAKNFYKLSTTTNSKKGFIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDE-NFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKI 193          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_ECOLI (Peptidyl-prolyl cis-trans isomerase B OS=Escherichia coli (strain K12) GN=ppiB PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 57/164 (34.76%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANS-GPNTNGSQFFISYAKQPHLNGL--------YTVLGRVIHGFEVLDLMEKAQTGSG----DRPLAEIRINRVTI 498
            VT HTN GDI      D+ P+T +NFL  C  G+Y+ TIFHR I GFMIQ            +   +   +E    LK N RG L+MA +  P++  +QFFI+      LN          Y V   V+ G +V+D ++   TG      D P  ++ I  VT+
Sbjct:    2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKAT--KEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    4 INSELWFGVGGKMSVTLHTN---LGDIKCGIACDEVPKTAENFLALCASGY----YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRE-SLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 486
            + S L F V  ++ + +  N   +G I  G+     PKT  NF  +C  G     Y G+ FHR +  F++Q             SI+G  F DE +  +++HN  G L MAN GP+TNG QF+++      L+G +TV G+V+ G + +  +E  +T + D P+  + I+
Sbjct:   17 VASGLSFTVTSRIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICLRGINGTSYVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVIS 186          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL4_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus fumigatus GN=cyp6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 58/175 (33.14%), Postives = 80/175 (45.71%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ----XXXXXXXXXXXXSIWG-------KKFNDEIRESLKHNARGILSMA------NSGPNTNGSQFFISYAKQ-PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            MSV L T+LGDI   +  DE PK  ENFL LC   YY+ +  H   K F  Q                SIWG       + F+ ++   LKH  RG +SMA      +       SQF ++      +L+G   + G+V+ GF+VL+ +  A      RPL +IRI    I  +P
Sbjct:    1 MSVLLETSLGDIVIDLLVDESPKACENFLKLCKVKYYNFSPVHSVQKNFTFQTGDPLGPDSPESDGGSSIWGLLEGPVKRTFSLKLSPKLKHTERGTVSMATVPSSHDPDERLAASQFIVTLEDNLDYLDGKAAIFGKVVEGFDVLEKINGAFIDDQGRPLKDIRIRHTVILDDP 175          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
CWC27_ASPFU5.346e-1632.53Peptidyl-prolyl isomerase cwc27 OS=Aspergillus fum... [more]
PPIA_STRCH6.981e-1647.41Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPIA_NEOCA6.981e-1641.79Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYPH_NEUCR6.981e-1638.67Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIL6_HUMAN9.118e-1634.57Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL4_ASPOR1.191e-1533.71Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspe... [more]
CYPB_YEAST1.191e-1536.30Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPIB_ECOLI4.525e-1534.76Peptidyl-prolyl cis-trans isomerase B OS=Escherich... [more]
CYPR_DROME4.525e-1531.76Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL4_ASPFU5.910e-1533.14Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspe... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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