FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL4_EMENI (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans GN=cyp6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ----XXXXXXXXXXXXSIWG-------KKFNDEIRESLKHNARGILSMANSGPNTNG-------SQFFISYAKQ-PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            MSV L T+LGDI   +  DE PK  ENFL LC   YY+ + F+   K F  Q                SIWG       +     +   LKH+ +G +SMA + P+ +        SQF ++      +L+G   + G+V+ GF+VL+ + +A      RPL +IRI    I  +P
Sbjct:    1 MSVLLETSLGDIVIDLLVDESPKACENFLKLCKVKYYNFSPFYSVQKNFSFQTGDPIGPDSPDSNGGSSIWGLLEGPSKQAVPLALPPKLKHDEKGTVSMA-AVPSPHDPDLRLVTSQFIVTLGDNLDYLDGKAVIFGKVVEGFDVLEKVNEAFIDDRGRPLKDIRIRHTVILDDP 175          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_BACSU (Peptidyl-prolyl cis-trans isomerase B OS=Bacillus subtilis GN=ppiB PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 43/108 (39.81%), Postives = 55/108 (50.93%), Query Frame = 1
Query:   94 DEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFE 417
            +  P T  NF  L   G+YDG  FHR I GF+ Q               G     E   +   +  G LSMA++G +T GSQFFI +  QPHLNG++TV G+V  G E
Sbjct:   21 EAAPGTVANFEKLANEGFYDGLTFHRVIPGFVSQGGCPHGTGTGGP---GYTIKCETEGNPHTHEAGALSMAHAGKDTGGSQFFIVHEPQPHLNGVHTVFGKVTSGLE 125          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_STRAT (Peptidyl-prolyl cis-trans isomerase cyp18 OS=Streptomyces antibioticus GN=cyp18 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGL--------YTVLGRVIHGFEVLDLMEKAQTGS 453
            +V L+T+ G I   +   E PKT ENFLA   SG+YDGTIFHR I  FMIQ            ++      +E    L+++   +     + P++  +QFFI+      LN          Y V GRV  G +V+D ++  +TGS
Sbjct:    3 TVELNTSAGRIVLELNDAEAPKTVENFLAYVRSGHYDGTIFHRVISDFMIQGGGFTPDMQQKSTL--APIQNEADNGLRNDNYTVAMARTNDPHSATAQFFINVKDNAFLNHTSKTPNGWGYAVFGRVTEGQDVVDAIKGVKTGS 145          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_PSEAE (Peptidyl-prolyl cis-trans isomerase A OS=Pseudomonas aeruginosa GN=ppiA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 55/162 (33.95%), Postives = 79/162 (48.77%), Query Frame = 1
Query:   37 KMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKH---NARGILSMANSG-PNTNGSQFFISYAKQPHLNG-----LYTVLGRVIHGFEVLDLMEKAQT----GSGDRPLAEIRI 483
            K  V + T+LG+I+  +   + P + +NFL    SGYYDGT+FHR I GFM+Q             +  KK    I+    +   N RG L+MA +G  ++  SQFFI+      LN       Y V G+V+ G  V+D + K  T    G  D P  ++ I
Sbjct:   26 KPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQ------TGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVI 181          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_ACIAD (Peptidyl-prolyl cis-trans isomerase OS=Acinetobacter sp. (strain ADP1) GN=rotA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMA-NSGPNTNGSQFFISYAKQPHLNGL-----YTVLGRVIHGFEVLDLMEKAQTGS 453
            V + TNLG+I+  +  ++ P +A+NF +   + +Y+GTIFHR I  FMIQ            +       +E    L  N RG L+MA  S P++  SQFFI+ A    LN       Y V G+VI G +V+D +    T +
Sbjct:   24 VEMKTNLGNIEIELYNNKAPISAKNFESYVKNNFYNGTIFHRVIPNFMIQGGGFETNMKEKAT--AAPIKNEASNGLA-NTRGTLAMARTSNPDSATSQFFINVADNNFLNASRTDAGYAVFGKVIKGMDVVDKIANVPTST 162          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_BRUAB (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus GN=ppi PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 52/163 (31.90%), Postives = 69/163 (42.33%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX------SIWGKKFNDEIRESLKHN-ARGILSMANS-GPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHAN 507
            +V L    GD+   I  D  PK       L   G Y+G  FHR I GFM Q                     G  + D   E  K    RG + MA S  PN+  SQFFI +   P LNG YTV+G+V+ G + +D ++K             +I + TI A+
Sbjct:   32 TVILKLKDGDVALEIRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKKGSEAENGAVKNPDKIIKATIEAD 194          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_BRUA2 (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella abortus (strain 2308) GN=ppi PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 52/163 (31.90%), Postives = 69/163 (42.33%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX------SIWGKKFNDEIRESLKHN-ARGILSMANS-GPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHAN 507
            +V L    GD+   I  D  PK       L   G Y+G  FHR I GFM Q                     G  + D   E  K    RG + MA S  PN+  SQFFI +   P LNG YTV+G+V+ G + +D ++K             +I + TI A+
Sbjct:   32 TVILKLKDGDVALEIRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKKGSEAENGAVKNPDKIIKATIEAD 194          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL4_USTMA (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis GN=CYP6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 58/191 (30.37%), Postives = 80/191 (41.88%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGK------------KFNDEIRE-SLKHNARGILSMA---------------NSGPNTNGSQFFISYAKQ-PHLNGLYTVLGRVIHGFE---VLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 516
            MSV L T+LGDI   +  +  P++  NFL LC+  YY    F R  K F+ Q            SIW +             F  E  +  LKH  +G +S A                S     GSQFF++   +  +L+G +   G V+ G E    LD +  A T    RPL +IRI  V +  +P A
Sbjct:    1 MSVLLETSLGDIVIDLHTELAPRSCTNFLKLCSKHYYKLNAFFRVEKDFLAQTGDPSNTGKGGASIWSQLPSTSQDSSTSTYFTPESSDGQLKHLKKGTVSFACFRKHVQGADEDGEGGSCELLAGSQFFVTLKDELDYLDGRHAPFGMVVEGHEPGGTLDKINHAFTDDQKRPLRDIRIRHVVVLEDPFA 191          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_BRUSU (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis GN=ppi PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 51/163 (31.29%), Postives = 69/163 (42.33%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX------SIWGKKFNDEIRESLKHN-ARGILSMANS-GPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHAN 507
            +V L    GD+   +  D  PK       L   G Y+G  FHR I GFM Q                     G  + D   E  K    RG + MA S  PN+  SQFFI +   P LNG YTV+G+V+ G + +D ++K             +I + TI A+
Sbjct:   32 TVILKLKDGDVALELRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKKGSEAENGAVKNPDKIIKATIEAD 194          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_BRUME (Probable peptidyl-prolyl cis-trans isomerase OS=Brucella melitensis GN=ppi PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 51/163 (31.29%), Postives = 69/163 (42.33%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX------SIWGKKFNDEIRESLKHN-ARGILSMANS-GPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHAN 507
            +V L    GD+   +  D  PK       L   G Y+G  FHR I GFM Q                     G  + D   E  K    RG + MA S  PN+  SQFFI +   P LNG YTV+G+V+ G + +D ++K             +I + TI A+
Sbjct:   32 TVILKLKDGDVALELRPDLAPKHVAQIKKLVREGAYNGVAFHRVIPGFMAQTGDVKFGNMDKGFDAARVGTGGSNYPDLPAEFSKEPFVRGTVGMARSQNPNSANSQFFIMFDDGPFLNGQYTVVGKVVSGMDAVDKIKKGSEAENGAVKNPDKIIKATIEAD 194          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIL4_EMENI2.483e-1332.39Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emer... [more]
PPIB_BACSU3.243e-1339.81Peptidyl-prolyl cis-trans isomerase B OS=Bacillus ... [more]
PPIB_STRAT5.532e-1333.79Peptidyl-prolyl cis-trans isomerase cyp18 OS=Strep... [more]
PPIA_PSEAE4.683e-1233.95Peptidyl-prolyl cis-trans isomerase A OS=Pseudomon... [more]
PPIA_ACIAD1.043e-1134.51Peptidyl-prolyl cis-trans isomerase OS=Acinetobact... [more]
PPI1_BRUAB1.363e-1131.90Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUA21.363e-1131.90Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPIL4_USTMA2.324e-1130.37Peptidyl-prolyl cis-trans isomerase-like 4 OS=Usti... [more]
PPI1_BRUSU2.324e-1131.29Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]
PPI1_BRUME2.324e-1131.29Probable peptidyl-prolyl cis-trans isomerase OS=Br... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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