FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_MYCTU (Probable peptidyl-prolyl cis-trans isomerase B OS=Mycobacterium tuberculosis GN=ppiB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 1 
Query:   37 KMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDE------------IRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRV-IHGFEVLDLMEKAQTGSG---DRPLAEIRINRVTI 498
            ++SV++ TN G+I   +A +E P T  +F++L   G++ GT  HR     M+                G +F +E            + E + +  RG L+MAN+GPNTN SQFF+ Y +   L   YTV G +   G   LD + KA    G    +P  E+ I  V +
Sbjct:  140 QVSVSMVTNQGNIGLMLANNESPCTVNSFVSLAQQGFFKGTTCHRLTTSPMLAVLQCGDPKGDGTGGPGYQFANEYPTDQYSANDPKLNEPVIY-PRGTLAMANAGPNTNSSQFFMVY-RDSKLPPQYTVFGTIQADGLTTLDKIAKAGVAGGGEDGKPATEVTITSVLL 307
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIB_MYCTU6.762e-1131.18Probable peptidyl-prolyl cis-trans isomerase B OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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