FC920968

Overview
NameFC920968
Unique NameFC920968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.219e-38
Identity = 81/126 (64.29%), Postives = 103/126 (81.75%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPG 462
            MGRVRTKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKIAGF THLMKR++   VRGIS+KLQEEERERR ++VPD SA++ D IEVD ET +ML+ L  N I  +   +P APG
Sbjct:    1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNIV-VQLTNPTAPG 125          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of FC920968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_ANOGA1.219e-3864.2940S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17_BOVIN1.592e-3863.1140S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG2.080e-3863.1140S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]
RS17_MOUSE2.080e-3863.1140S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU2.080e-3863.1140S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN2.080e-3863.1140S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA2.080e-3863.1140S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR2.080e-3863.1140S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA2.080e-3863.1140S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK2.080e-3863.1140S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]

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Properties
Property NameValue
Genbank descriptionC32201D12EF RVDevelopN Citrus clementina cDNA clone C32201D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920968 ID=FC920968; Name=FC920968; organism=Citrus clementina; type=EST; length=691bp
GGGGCAACGCTAACAAAGCACGCACAGGCACAGAGCTCTCTTTCTCTTAT
ACGCCATTGTCAATCTCTCAGCAGCACAACCAAAATGGGTCGAGTCCGAA
CAAAGACAGTGAAGAAATCTTCGCGCCAAGTGATCGAGCGTTACTATTCA
CGCATGACCCTTGACTTCCACACGAACAAGAAGATCCTCGAGGAAGTGGC
GATCATCCCATCAAAACGGCTACGTAACAAGATCGCCGGGTTCTCGACCC
ACTTGATGAAACGGATCCAGAAGGGTCCGGTTCGTGGCATCTCGTTGAAG
CTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCGGACGAGAG
TGCCATCAAGACTGATCAAATTGAGGTCGATAAGGAGACTCTTGACATGC
TTGAGGCTCTTGGTATGAATGAGATCCCGGGTCTTGTTCGGGTCGACCCG
GTTGCTCCAGGAGTTGAGTTCGGGCGTGGCGGCTTTGCTGGAGCCAGGAG
GAGGTTTTAGATAGTTGGGTTTTGGTTGGTGTTTGCTAGATTTCATTTTT
AAAGACTTAATTTGATGTTTTTGATTTTGCCGAATATGTTCATGGTTAAT
TTTGTTTTTGTTGGAACATTTTGATGTTATATTGAATGGGTACATTGTGC
CTCAGCTATTTTTGATCTTAAAAAAAAAAAAAAAAAAAAAA
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