FC920968

Overview
NameFC920968
Unique NameFC920968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 82/129 (63.57%), Postives = 104/129 (80.62%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAI------KTDQIEVDKETLDMLEALGMNEIPGLVRVDPV 453
            MGRVRTKTVKKS++ +IERYY ++TLDF TNK+I +E+AII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ SA+      ++ Q++VD ET D+L+ LG + IP  V V PV
Sbjct:    1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRICDEIAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDFTQNSESGQLDVDTETKDLLKHLGFDSIP--VNVIPV 127          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + IEVD +T +ML+ L    +  L    P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_DROME (40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 77/122 (63.11%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKK+++ +IE+YY+R+TLDFHTNK+I EEVAIIP+K LRNKIAG+ THLM R++   VRGIS+KLQEEERERR ++VP  SA++ D IEVD +T +ML+ L  + I GL    P
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQ---IEVDKETLDMLEALGMN 420
            M RVRTKTVKK+SR +IE+YY+RMT DFH NK++ +EVAII SK LRNKIAG+ THLM+RI++GPVRGIS+KLQEEERERR +++P+ S +   Q   I+VD +T DML+A G N
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.178e-35
Identity = 71/115 (61.74%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQ----IEVDKETLDMLEALGM 417
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+   +    + VD +T D++++LG+
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGL 115          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.178e-35
Identity = 71/115 (61.74%), Postives = 95/115 (82.61%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQ----IEVDKETLDMLEALGM 417
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+   +    + VD +T D++++LG+
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGL 115          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 72/122 (59.02%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEA-LGMNEIPGLVRVD 447
            MGRVRTKT+K++S+ +IE++Y R+T DF TNK+  +++A IPSKRLRNKIAGF THLM+RI  GPVRGIS KLQEEERE+R ++VP ESAIKT+++++D++  +ML++ L    IP +  VD
Sbjct:    1 MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEMLKSTLEFPTIPQIHVVD 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_ENCCU (40S ribosomal protein S17 OS=Encephalitozoon cuniculi GN=RPS17 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALG 414
            MG VR K VK+++R + E+Y+ R+   F  N  ++++VA++ SK+L+N+IAG+ T L K+I KG    + +K  EEERER+ + +P ES +  D +EVD  T++M++  G
Sbjct:    1 MGCVRNKIVKRAARTIAEKYFQRLDSTFDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERKENVIPKESMLDVDCVEVDDVTMEMIKRYG 110          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17E_METJA (30S ribosomal protein S17e OS=Methanocaldococcus jannaschii GN=rps17e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 270
            MGR+R   +K+++ ++I++Y    T DF TNK++LEEVA I +KRLRN+IAG+ TH M+++Q
Sbjct:    1 MGRIRQTLIKRTAMELIKKYRDLFTTDFETNKRVLEEVAQISTKRLRNRIAGYITHKMRQLQ 62          
The following BLAST results are available for this feature:
BLAST of FC920968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_CANFA2.080e-3863.1140S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17_NEUCR2.716e-3863.5740S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17_RAT3.547e-3863.1140S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]
RS17_DROME6.690e-3763.1140S ribosomal protein S17 OS=Drosophila melanogast... [more]
RS17_CAEEL6.262e-3564.3540S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17B_YEAST8.178e-3561.7440S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST8.178e-3561.7440S ribosomal protein S17-A OS=Saccharomyces cerev... [more]
RS17_DICDI4.059e-3459.0240S ribosomal protein S17 OS=Dictyostelium discoid... [more]
RS17_ENCCU7.431e-2040.9140S ribosomal protein S17 OS=Encephalitozoon cunic... [more]
RS17E_METJA5.703e-1250.0030S ribosomal protein S17e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC32201D12EF RVDevelopN Citrus clementina cDNA clone C32201D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920968 ID=FC920968; Name=FC920968; organism=Citrus clementina; type=EST; length=691bp
GGGGCAACGCTAACAAAGCACGCACAGGCACAGAGCTCTCTTTCTCTTAT
ACGCCATTGTCAATCTCTCAGCAGCACAACCAAAATGGGTCGAGTCCGAA
CAAAGACAGTGAAGAAATCTTCGCGCCAAGTGATCGAGCGTTACTATTCA
CGCATGACCCTTGACTTCCACACGAACAAGAAGATCCTCGAGGAAGTGGC
GATCATCCCATCAAAACGGCTACGTAACAAGATCGCCGGGTTCTCGACCC
ACTTGATGAAACGGATCCAGAAGGGTCCGGTTCGTGGCATCTCGTTGAAG
CTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCGGACGAGAG
TGCCATCAAGACTGATCAAATTGAGGTCGATAAGGAGACTCTTGACATGC
TTGAGGCTCTTGGTATGAATGAGATCCCGGGTCTTGTTCGGGTCGACCCG
GTTGCTCCAGGAGTTGAGTTCGGGCGTGGCGGCTTTGCTGGAGCCAGGAG
GAGGTTTTAGATAGTTGGGTTTTGGTTGGTGTTTGCTAGATTTCATTTTT
AAAGACTTAATTTGATGTTTTTGATTTTGCCGAATATGTTCATGGTTAAT
TTTGTTTTTGTTGGAACATTTTGATGTTATATTGAATGGGTACATTGTGC
CTCAGCTATTTTTGATCTTAAAAAAAAAAAAAAAAAAAAAA
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