FC920968

Overview
NameFC920968
Unique NameFC920968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17E_META3 (30S ribosomal protein S17e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps17e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI 267
            MGR+R   +K++   ++E+Y  R+T DF TNKK+++EVA I +KRLRN++AG+ T  MK++
Sbjct:    1 MGRIRQTFIKRAGEDLVEKYEDRLTTDFETNKKVIDEVAEIATKRLRNRVAGYVTKKMKKV 61
The following BLAST results are available for this feature:
BLAST of FC920968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17E_META31.271e-1147.5430S ribosomal protein S17e OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionC32201D12EF RVDevelopN Citrus clementina cDNA clone C32201D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920968 ID=FC920968; Name=FC920968; organism=Citrus clementina; type=EST; length=691bp
GGGGCAACGCTAACAAAGCACGCACAGGCACAGAGCTCTCTTTCTCTTAT
ACGCCATTGTCAATCTCTCAGCAGCACAACCAAAATGGGTCGAGTCCGAA
CAAAGACAGTGAAGAAATCTTCGCGCCAAGTGATCGAGCGTTACTATTCA
CGCATGACCCTTGACTTCCACACGAACAAGAAGATCCTCGAGGAAGTGGC
GATCATCCCATCAAAACGGCTACGTAACAAGATCGCCGGGTTCTCGACCC
ACTTGATGAAACGGATCCAGAAGGGTCCGGTTCGTGGCATCTCGTTGAAG
CTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCGGACGAGAG
TGCCATCAAGACTGATCAAATTGAGGTCGATAAGGAGACTCTTGACATGC
TTGAGGCTCTTGGTATGAATGAGATCCCGGGTCTTGTTCGGGTCGACCCG
GTTGCTCCAGGAGTTGAGTTCGGGCGTGGCGGCTTTGCTGGAGCCAGGAG
GAGGTTTTAGATAGTTGGGTTTTGGTTGGTGTTTGCTAGATTTCATTTTT
AAAGACTTAATTTGATGTTTTTGATTTTGCCGAATATGTTCATGGTTAAT
TTTGTTTTTGTTGGAACATTTTGATGTTATATTGAATGGGTACATTGTGC
CTCAGCTATTTTTGATCTTAAAAAAAAAAAAAAAAAAAAAA
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