FC920997

Overview
NameFC920997
Unique NameFC920997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_ARGMO (60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.857e-22
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_JULON (60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.650e-22
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFLL ARRKDA+SVKIK++ D VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREITEIKDFLLKARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_SPOFR (60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.907e-21
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I +IKDFLL ARRKDA+SVKIK+++  VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_PLUXY (60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.797e-21
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I +IKDFLL ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_ARTSF (60S ribosomal protein L38 OS=Artemia sanfranciscana GN=RPL38 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.958e-21
Identity = 47/69 (68.12%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQ+ EIKDFL+ ARRKDA+S KIK++ D  KFK+RCS++LYTL + DSEKA+KLK+SLPPGL V++L
Sbjct:    1 MPKQLMEIKDFLIKARRKDAKSCKIKKNPDNTKFKLRCSRFLYTLVITDSEKAEKLKKSLPPGLQVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_AEDAE (60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.958e-21
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I E+KDFL+ ARRKDAR+VKIK++ +  KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_MACHI (60S ribosomal protein L38 OS=Maconellicoccus hirsutus GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.476e-21
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRSSNS 284
            MP++I EIK+FL+ ARRKDA+SVKIK++   VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++  R S +
Sbjct:    1 MPREIKEIKEFLIKARRKDAKSVKIKKNPTNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEIKCRKSKT 76          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_BOMMO (60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.476e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_TIMBA (60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.458e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP+++ EIK+FLLTARRKDA+SVKIK++ +  KFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPRELTEIKEFLLTARRKDAKSVKIKKNPENTKFKVRCSRFLYTLVITDREKAEKLKQSLPPGLQVKEV 69          
The following BLAST results are available for this feature:
BLAST of FC920997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARGMO3.434e-2274.2960S ribosomal protein L38 OS=Argas monolakensis GN... [more]
RL38_LYSTE5.857e-2269.5760S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
RL38_JULON7.650e-2271.0160S ribosomal protein L38 OS=Julodis onopordi GN=R... [more]
RL38_SPOFR2.907e-2168.1260S ribosomal protein L38 OS=Spodoptera frugiperda... [more]
RL38_PLUXY3.797e-2168.1260S ribosomal protein L38 OS=Plutella xylostella G... [more]
RL38_ARTSF4.958e-2168.1260S ribosomal protein L38 OS=Artemia sanfranciscan... [more]
RL38_AEDAE4.958e-2166.6760S ribosomal protein L38 OS=Aedes aegypti GN=RpL3... [more]
RL38_MACHI6.476e-2163.1660S ribosomal protein L38 OS=Maconellicoccus hirsu... [more]
RL38_BOMMO6.476e-2166.6760S ribosomal protein L38 OS=Bombyx mori GN=RpL38 ... [more]
RL38_TIMBA8.458e-2166.6760S ribosomal protein L38 OS=Timarcha balearica GN... [more]

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Properties
Property NameValue
Genbank descriptionC32201G11EF RVDevelopN Citrus clementina cDNA clone C32201G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920997 ID=FC920997; Name=FC920997; organism=Citrus clementina; type=EST; length=525bp
GGTGAAGCTCAAAGCTGCTCTTCCTCCTTTCTTTTGAAGAAGCTGCTTTA
ATCAAAATGCCTAAACAGATCCACGAGATCAAGGATTTCCTTCTTACTGC
AAGAAGGAAGGATGCCCGTTCTGTAAAAATCAAGAGGAGCAGGGATGTTG
TTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGTGTTTTT
GACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAG
CGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGATCAGAAG
TTGATGAAATTTGTTTCGCACTTTCTACCTCGAAATTGTTAGGCCTTACA
AATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTTATTAGT
TTTCTTGGGAATTTTCTCCAAAAATTTCGTTCTAATGAGTTTGAGTTGTA
TATCACCTTAGTGGTTTTTTATCGATCAAGTCGGAACATGTCTATTTTTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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