FC920997

Overview
NameFC920997
Unique NameFC920997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_CAEEL (60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 8.458e-21
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPK+I EIKDFL+ ARRKDA+SVKIK++ +  KFKVRC+ YLYTL V D +KA+KLKQSLPPG+ V++L
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_LONON (60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I +IKDFLL ARRKDA+SV+IK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVEIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_ANOGA (60S ribosomal protein L38 OS=Anopheles gambiae GN=RpL38 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.105e-20
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I E+KDFL+ ARRKDAR+VKIK++    KFK+RCS+YLYTL V D EKA+KLKQSLPPGL V+++
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNETNTKFKIRCSRYLYTLVVKDMEKAEKLKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_OSTOS (60S ribosomal protein L38 OS=Ostertagia ostertagi GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.351e-20
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQI EIKDFL+ ARRKDA+ VKIK++   VKFKVRCS+YL+TL V D +KA+KLKQSLPPG+ V +L
Sbjct:    1 MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_DROYA (60S ribosomal protein L38 OS=Drosophila yakuba GN=RpL38 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.721e-19
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I E+KDFL  ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_DROME (60S ribosomal protein L38 OS=Drosophila melanogaster GN=RpL38 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.721e-19
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I E+KDFL  ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:    1 MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38A_SCHPO (60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe GN=rpl38a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 43/74 (58.11%), Postives = 60/74 (81.08%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 275
            MP+QI +IK FL  ARRKDA S +IK++ +  VKFK+RCSKYLYTL V D++KA+KL+QSLPP L+V ++ +++
Sbjct:    1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEVGKKA 74          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_NEUCR (60S ribosomal protein L38 OS=Neurospora crassa GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.113e-15
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDV--VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 275
            MP++I +IK F+   RRKDA + +IK+++    +KFKVRC KYLYTL + DS+KA+KLK SLPP L++ D+ +R+
Sbjct:    1 MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADVAKRN 75          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_DICDI (60S ribosomal protein L38 OS=Dictyostelium discoideum GN=rpl38 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKR-SRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL 248
            MP++I EIKDFL+T R KDA+ ++IK+  +++ KFKVRC +YLYTL V D+ KA KL Q+LPP +
Sbjct:    1 MPREIREIKDFLVTVRNKDAKEIRIKKVGKNLTKFKVRCGRYLYTLRVADNAKAAKLMQTLPPSI 65          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38B_SCHPO (60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe GN=rpl38b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.057e-15
Identity = 38/74 (51.35%), Postives = 59/74 (79.73%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 275
            MP+Q+ +IK FL  A R DA S ++K++++  VKFK+RCS+YLYTL V D++KA+KL+QSLPP L+V ++ +++
Sbjct:    1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEVGKKA 74          
The following BLAST results are available for this feature:
BLAST of FC920997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_CAEEL8.458e-2168.1260S ribosomal protein L38 OS=Caenorhabditis elegan... [more]
RL38_LONON1.105e-2066.6760S ribosomal protein L38 OS=Lonomia obliqua GN=Rp... [more]
RL38_ANOGA1.105e-2066.6760S ribosomal protein L38 OS=Anopheles gambiae GN=... [more]
RL38_OSTOS9.351e-2069.5760S ribosomal protein L38 OS=Ostertagia ostertagi ... [more]
RL38_DROYA2.721e-1963.7760S ribosomal protein L38 OS=Drosophila yakuba GN=... [more]
RL38_DROME2.721e-1963.7760S ribosomal protein L38 OS=Drosophila melanogast... [more]
RL38A_SCHPO1.264e-1658.1160S ribosomal protein L38-1 OS=Schizosaccharomyces... [more]
RL38_NEUCR3.113e-1552.0060S ribosomal protein L38 OS=Neurospora crassa GN=... [more]
RL38_DICDI9.057e-1556.9260S ribosomal protein L38 OS=Dictyostelium discoid... [more]
RL38B_SCHPO9.057e-1551.3560S ribosomal protein L38-2 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC32201G11EF RVDevelopN Citrus clementina cDNA clone C32201G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920997 ID=FC920997; Name=FC920997; organism=Citrus clementina; type=EST; length=525bp
GGTGAAGCTCAAAGCTGCTCTTCCTCCTTTCTTTTGAAGAAGCTGCTTTA
ATCAAAATGCCTAAACAGATCCACGAGATCAAGGATTTCCTTCTTACTGC
AAGAAGGAAGGATGCCCGTTCTGTAAAAATCAAGAGGAGCAGGGATGTTG
TTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGTGTTTTT
GACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAG
CGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGATCAGAAG
TTGATGAAATTTGTTTCGCACTTTCTACCTCGAAATTGTTAGGCCTTACA
AATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTTATTAGT
TTTCTTGGGAATTTTCTCCAAAAATTTCGTTCTAATGAGTTTGAGTTGTA
TATCACCTTAGTGGTTTTTTATCGATCAAGTCGGAACATGTCTATTTTTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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