FC921006

Overview
NameFC921006
Unique NameFC921006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921006_ssr54 microsatellite FC921006_ssr54:54..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H +VWNS P+TYG GSR+CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:    1 MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 244
            M H +VWNS P+TYG G+R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_RAT (40S ribosomal protein S29 OS=Rattus norvegicus GN=Rps29 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_PONAB (40S ribosomal protein S29 OS=Pongo abelii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_MOUSE (40S ribosomal protein S29 OS=Mus musculus GN=Rps29 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MG  N+W SHP+ YG GSR+CR C N H IIRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFREYASDIGFKK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH+N+W SHP+ Y  GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of FC921006 vs. ExPASy Swiss-Prot
Match: RS29_HUMAN (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 2
Query:   77 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 238
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
The following BLAST results are available for this feature:
BLAST of FC921006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_NEUCR7.425e-1662.5040S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_MAGGR1.266e-1562.5040S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_ICTPU1.654e-1564.8140S ribosomal protein S29 OS=Ictalurus punctatus G... [more]
RS29_HIPCM1.654e-1564.8140S ribosomal protein S29 OS=Hippocampus comes GN=... [more]
RS29_RAT2.160e-1562.9640S ribosomal protein S29 OS=Rattus norvegicus GN=... [more]
RS29_PONAB2.160e-1562.9640S ribosomal protein S29 OS=Pongo abelii GN=RPS29... [more]
RS29_MOUSE2.160e-1562.9640S ribosomal protein S29 OS=Mus musculus GN=Rps29... [more]
RS29_LYSTE2.160e-1564.8140S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]
RS29_LONON2.160e-1562.9640S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_HUMAN2.160e-1562.9640S ribosomal protein S29 OS=Homo sapiens GN=RPS29... [more]

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Properties
Property NameValue
Genbank descriptionC32201H10EF RVDevelopN Citrus clementina cDNA clone C32201H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921006 ID=FC921006; Name=FC921006; organism=Citrus clementina; type=EST; length=745bp
GACAATTAGCATTTGCATTGCGGAGAAGAGTGCGGCAGCAGAGTAGAGCA
GAGCAGGACAGGACAGGAGAGAAGAGATGGGTCACTCCAACGTATGGAAT
TCGCATCCCAAGACCTACGGCCCTGGATCTCGTGCTTGCCGCGTTTGCGG
GAACCCTCATGCGATTATCAGAAAGTACGGCCTCATGTGCTGCAGGCAGT
GCTTCCGCAGCAACGCCAAGGAGATCGGTTTCGTCAAGTACCGCTGAAGA
AGATGGCTGTCAAGGCTTTGCAGTGGACTGTGGAGCATACCTAGGAATGG
AGAAATTTTCAGTTTTCATGTGATTTCTTTTTAGTTTTTCACAAGTAGCA
TAAAGCTTGTGGATCAATTAGAGCTTGAACTTTGTAGATGGATTTCTTTG
CTGTCTTAATATGACTGCCAATCTTATTACTTTAATGTTCTCTTATGTAT
GGAGTACAAGAGTGTCTTATAGTTTTCTCTTGCTTTTGGAGTATTAACAT
GTTAAATGATACCTGATCTGTGGGAAATTTATGCCCGTTTTATCAAGAAA
AAATTACTACCAATGCCCACCATGGGCGGCAGGTGGCCTCTCGGTATTTC
GGGCGTCCAGCTTCAGCAGCTGACAAAGCCGAAGAGTTTTAAAATATGAT
TTTAGGTATTTAGCTACTTCGTTATCAGCAATCACTTGTTCAAAGTCATC
GAACTGGTAGGATCTTAGGGAAAGAGATACNAGTATATATCTGCC
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