FC921073

Overview
NameFC921073
Unique NameFC921073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_MOUSE (Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_HUMAN (Protein transport protein Sec61 subunit gamma OS=Homo sapiens GN=SEC61G PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_CANFA (Protein transport protein Sec61 subunit gamma OS=Canis familiaris GN=SEC61G PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_BOVIN (Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVG
Sbjct:    1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVG 67          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_CIOIN (Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD +    +P + FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IPINNIIVGS
Sbjct:    1 MDQVMAWVEPGKQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIPINNIIVGS 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_CAEEL (Protein transport protein Sec61 subunit gamma OS=Caenorhabditis elegans GN=emo-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVGS 246
            MD    + +P R F+KDS RLVKRC KPDRKE+ K+A  TAI            KLI IPINNIIVG+
Sbjct:    1 MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGA 68          
BLAST of FC921073 vs. ExPASy Swiss-Prot
Match: SC61G_DICDI (Protein transport protein Sec61 subunit gamma OS=Dictyostelium discoideum GN=sec61g PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   43 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPINNIIVG 243
            MD ++    PL+DFAK+S+RL K+C KPD +EF K+A  T I            KLI IPINNI+VG
Sbjct:    1 MDILEETAAPLKDFAKNSIRLFKKCTKPDAQEFQKIALATLIGFAIMGFIGFFVKLIHIPINNILVG 67          
The following BLAST results are available for this feature:
BLAST of FC921073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SC61G_MOUSE4.893e-1356.72Protein transport protein Sec61 subunit gamma OS=M... [more]
SC61G_HUMAN4.893e-1356.72Protein transport protein Sec61 subunit gamma OS=H... [more]
SC61G_CANFA4.893e-1356.72Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_BOVIN4.893e-1356.72Protein transport protein Sec61 subunit gamma OS=B... [more]
SC61G_CIOIN8.347e-1357.35Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_CAEEL8.347e-1354.41Protein transport protein Sec61 subunit gamma OS=C... [more]
SC61G_DICDI4.580e-1149.25Protein transport protein Sec61 subunit gamma OS=D... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32202G08EF RVDevelopN Citrus clementina cDNA clone C32202G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921073 ID=FC921073; Name=FC921073; organism=Citrus clementina; type=EST; length=520bp
CGGGGAGATCTCAAATTCGCTTCATTGAAGGAGAAAACGAAAATGGACGC
CATCGACAACGTCTTCGATCCGCTCAGAGATTTCGCAAAAGACAGCTTGC
GTCTCGTCAAGAGGTGTCACAAGCCCGATCGCAAAGAATTCACGAAGGTT
GCGTTCCGTACGGCGATCGGATTCGTTGTCATGGGATTCGTAGGTTTCTT
CGTCAAGTTGATCTTCATCCCTATCAACAATATTATTGTTGGATCTGGAT
AAGGCTGCAGAGTTGCTGGCTTTGATGATGGAAGTTATCAGCAGATTGAT
TCACACCCTTCAACGAAGGAATGAGTTAACCCGTTTAGAATTTTATTAGA
CAGTACCTCAAATATGCCTTGAATCTTTTTGAATTAGACTTTATATTTGC
TTTTAAGTTGACTTACTCCGGAAATATTTTACTTTTGTCGAAAATTAGTT
TGTTCTTACAGATTGGAACTTGCTACGTTAAATCATTTTGTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAA
back to top