FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_ORITI (30S ribosomal protein S14 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsN PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            KR  L  K +LKR+  KS   D NL  E R   + KL++LPRNSS TR+RNRC  TGR R  Y KF++ R + R LA  G++ G++K+SW
Sbjct:   12 KRSKLFNKLKLKRQALKSKIYDKNLSLEERFNLVLKLSKLPRNSSSTRIRNRCAETGRPRGYYRKFKLCRNIIRELAGSGIIPGLRKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_ORITB (30S ribosomal protein S14 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsN PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            KR  L  K +LKR+  KS   D NL  E R   + KL++LPRNSS TR+RNRC  TGR R  Y KF++ R + R LA  G++ G++K+SW
Sbjct:   12 KRSRLFNKLKLKRQALKSKIYDKNLSLEERFNLVLKLSKLPRNSSSTRIRNRCAETGRPRGYYRKFKLCRNIIRELAGSGIIPGLRKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_PARL1 (30S ribosomal protein S14 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsN PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 47/92 (51.09%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  176 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            D KRR L  K+  KR   K+   D  L  E R +   KLA LPRNSS TR+ NRC  TGRS+A Y K RMSRI  R LA++G + G+ K+SW
Sbjct:   10 DLKRRKLTAKYAAKRAKLKAATMDEALSMEDRFQAQLKLAELPRNSSKTRIHNRCEITGRSKAYYRKLRMSRIALRDLASRGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RR14_HELSJ (Plastid 30S ribosomal protein S14 OS=Helicosporidium sp. subsp. Simulium jonesii GN=rps14 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  170 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            + ++K+ +L  K+  KR L KS   +    T+   K L KL +LP+ SS T+LRNRC  TGR+R VY ++++SR VFR+LA  G+L GV KASW
Sbjct:    8 VREYKKNILVNKYYKKRLLLKSQLNNTINSTDCILKILNKLQKLPKKSSPTKLRNRCTLTGRARGVYSEYKISRFVFRNLALNGLLPGVFKASW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHIME (30S ribosomal protein S14 OS=Rhizobium meliloti GN=rpsN PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++ +RR L      KR + K++  + +LP E R K   KLA LPR+ S TR+RNRC  TGR RA Y K RMSRI  R L N G + GV K+SW
Sbjct:    9 KNKRRRKLVANHAAKRAVLKAIIMNQSLPIEERFKATLKLAELPRDGSKTRIRNRCEVTGRPRAYYRKLRMSRIALRELGNLGKVPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHOP5 (30S ribosomal protein S14 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsN PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE +++R+ +A     KR+  K++  D + P E R     KLA +PRNSS TR+RNRC  TGR+RAVY K ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRKKMAKNAAPKRERLKAIIADRSKPMEERFAATLKLAEMPRNSSITRVRNRCELTGRARAVYRKNKLSRIAIRDLGSRGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHOPS (30S ribosomal protein S14 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFEL-KRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE + RR   TK    KR   K++  D +LP E R     KLA +PRNSS TR+RNRC  TGRSR+VY   ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRRKMTKNAAPKRARLKAIIADKDLPMEERFAATLKLAEMPRNSSATRIRNRCEITGRSRSVYRLNKLSRIAIRDLGSKGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_SINMW (30S ribosomal protein S14 OS=Sinorhizobium medicae (strain WSM419) GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++ +RR L      KR   K+   + +LP E R K   KLA LPR+ S TR+RNRC  TGR RA Y K RMSRI  R L N G + GV K+SW
Sbjct:    9 KNKRRRKLVANHSAKRAALKATIMNQSLPIEERFKATLKLAELPRDGSKTRIRNRCEVTGRPRAYYRKLRMSRIALRELGNLGKVPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_SILST (30S ribosomal protein S14 OS=Silicibacter sp. (strain TM1040) GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + KR  L  K+  KR   K +  D + P E R K   KLA+LPRNSS TRL NRC  TGR  A Y K ++SRI  R L + G + G+ K+SW
Sbjct:    1 MAKKAMIEREKKRERLVAKYAAKRAELKEIANDESRPMEERFKARLKLAKLPRNSSATRLHNRCQLTGRPHAYYRKLKVSRIALRELGSNGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_PARUW (30S ribosomal protein S14 OS=Protochlamydia amoebophila (strain UWE25) GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  152 VSEKRNIEDHKRR--LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K ++E  KRR  L+  K++ +++L +  Y ++NL  E RE+    L ++PR+SS  RLRNRC  TGR+R    KF++SR+ FR LA+ GM+ GV K+SW
Sbjct:    1 MAKKSSVEKQKRRERLVQLKWDKRKELREKSY-NINLSEEEREQARIALNKMPRDSSPIRLRNRCQMTGRARGFMRKFKLSRLTFRELASMGMIPGVTKSSW 101          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RS14_ORITI5.687e-1748.8930S ribosomal protein S14 OS=Orientia tsutsugamush... [more]
RS14_ORITB5.687e-1748.8930S ribosomal protein S14 OS=Orientia tsutsugamush... [more]
RS14_PARL19.700e-1751.0930S ribosomal protein S14 OS=Parvibaculum lavament... [more]
RR14_HELSJ1.267e-1646.81Plastid 30S ribosomal protein S14 OS=Helicosporidi... [more]
RS14_RHIME2.161e-1648.3930S ribosomal protein S14 OS=Rhizobium meliloti GN... [more]
RS14_RHOP53.686e-1643.5630S ribosomal protein S14 OS=Rhodopseudomonas palu... [more]
RS14_RHOPS4.814e-1645.5430S ribosomal protein S14 OS=Rhodopseudomonas palu... [more]
RS14_SINMW6.287e-1648.3930S ribosomal protein S14 OS=Sinorhizobium medicae... [more]
RS14_SILST6.287e-1645.5430S ribosomal protein S14 OS=Silicibacter sp. (str... [more]
RS14_PARUW6.287e-1643.1430S ribosomal protein S14 OS=Protochlamydia amoebo... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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