FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_METS4 (30S ribosomal protein S14 OS=Methylobacterium sp. (strain 4-46) GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE +K+R+ L  ++  KR+   S   D +LP E R +   KLA LPRN++ TR+RNRC  TGR RA Y K  +SR+  R L ++GM+ G+ K+SW
Sbjct:    1 MAKKSKIERNKQRVALVKRYAAKREALLSTANDESLPMEDRFEARLKLAELPRNANPTRIRNRCAMTGRPRAYYRKLGISRVALRDLGSRGMIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_CAUCR (30S ribosomal protein S14 OS=Caulobacter crescentus GN=rpsN PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  188 RLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            + L  KF  KR   K++  D  LP E R +   KLA+LPRNS+  R+RNRC  TGR RA Y K +MSR+  R L +QG + G+ K+SW
Sbjct:   14 KALVKKFAEKRAALKAIANDETLPLEERFEARLKLAKLPRNSAAIRIRNRCEVTGRPRAYYRKLKMSRVALRELGSQGQIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_PARDP (30S ribosomal protein S14 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsN PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  +E + KR  L  K+  KR     +  D +LP E R K   KLA LPRNSS TRL NRC  TGR  A Y K ++SRI+ R L + G + G+ K+SW
Sbjct:    1 MAKKSMVEREKKRERLVQKYAAKRAALNEIIHDQSLPMEERFKASLKLAELPRNSSATRLHNRCQLTGRPHAYYRKLKLSRIMLRELGSFGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_DINSH (30S ribosomal protein S14 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsN PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + KR+ L  K+  KR   K +  D + P E R K   KLA LPRNSS TRL NRC  TGR  A Y K ++SRI  R L + G + G+ K+SW
Sbjct:    1 MAKKAMIEREKKRQKLVAKYAAKRAALKEIANDDSKPMEERFKARLKLAELPRNSSATRLHNRCQLTGRPHAYYRKLKISRIALRDLGSAGQIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHOP2 (30S ribosomal protein S14 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsN PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFEL-KRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE + RR   TK    KR   K++  D +LP E R     KLA +PRNSS TR+RNRC  TGR+R+VY   ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRKKMTKNAAPKRARLKAIIADKDLPMEERFAATLKLAEMPRNSSATRIRNRCEITGRARSVYRLNKLSRIAIRDLGSKGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHILO (30S ribosomal protein S14 OS=Rhizobium loti GN=rpsN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++++RR LA ++  KR   K++  D + P E R +   KLA LPRNS+  R+RNRC  TGR RA Y K ++SRI  R L N G + G+ K+SW
Sbjct:    9 KNNRRRKLADQYGPKRAALKAIIMDQSKPMEERFRAQLKLAALPRNSAKIRIRNRCEVTGRPRAYYRKLKVSRIALRDLGNNGQIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_HYPNA (30S ribosomal protein S14 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE +++R+ LA ++  KR   K+   D NL  E R K   KLA LPRNS+  R+RNRC  TGR RA Y K +MSRI  R   ++G + G+ K+SW
Sbjct:    1 MAKKSAIEKNNRRKALAARYAAKRAQLKAAAMDENLSLEERFKARLKLAELPRNSAPNRVRNRCEITGRPRAFYRKLKMSRIALREYGSRGQVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_SILPO (30S ribosomal protein S14 OS=Silicibacter pomeroyi GN=rpsN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + KR  L  ++  KR   K +  D + P E R K   KLA+LPRNSS TRL NRC  TGR  A Y K ++SRI+ R L + G + G+ K+SW
Sbjct:    1 MAKKSMIEREKKRERLVAQYAAKRAELKEIANDESRPMEERFKARLKLAKLPRNSSATRLHNRCQLTGRPHAYYRKLKVSRIMLRELGSAGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHOPB (30S ribosomal protein S14 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFEL-KRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE + RR   TK    KR   K++  D + P E R     KL+ +PRNSS TR+RNRC  TGR+R+VY K ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRKRLTKNAAPKRAKLKAIIADKSKPMEERFAATLKLSEMPRNSSATRIRNRCEITGRARSVYRKNKLSRIAIRDLGSRGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_METRJ (30S ribosomal protein S14 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsN PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  152 VSEKRNIEDHK-RRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +S+K ++E ++ R+ L  +F  KRK    +  +  L  E R +   KLA LPRNSS TR+RNRC  TGR RA Y K  +SR+  R L N+G++ G+ K+SW
Sbjct:    1 MSKKSSVEKNEARKALVKRFAAKRKALLEIANNDALEMEERFEARLKLAELPRNSSATRIRNRCGMTGRPRAYYRKMGISRVALRELGNRGLIPGLVKSSW 101          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RS14_METS46.287e-1643.5630S ribosomal protein S14 OS=Methylobacterium sp. ... [more]
RS14_CAUCR6.287e-1647.7330S ribosomal protein S14 OS=Caulobacter crescentu... [more]
RS14_PARDP8.212e-1644.5530S ribosomal protein S14 OS=Paracoccus denitrific... [more]
RS14_DINSH8.212e-1645.5430S ribosomal protein S14 OS=Dinoroseobacter shiba... [more]
RS14_RHOP21.072e-1544.5530S ribosomal protein S14 OS=Rhodopseudomonas palu... [more]
RS14_RHILO1.401e-1545.1630S ribosomal protein S14 OS=Rhizobium loti GN=rps... [more]
RS14_HYPNA1.401e-1544.5530S ribosomal protein S14 OS=Hyphomonas neptunium ... [more]
RS14_SILPO1.829e-1544.5530S ribosomal protein S14 OS=Silicibacter pomeroyi... [more]
RS14_RHOPB1.829e-1543.5630S ribosomal protein S14 OS=Rhodopseudomonas palu... [more]
RS14_METRJ1.829e-1543.5630S ribosomal protein S14 OS=Methylobacterium radi... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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