FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_AKKM8 (30S ribosomal protein S14 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rpsN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  218 RKLYKSLYRDVNLPTEVR-EKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +K  +++ R   L  +++ EK    L  LPRN+S TR  NRC+ +GR RA   +F++SRI FR LAN GM+ GV K+SW
Sbjct:   11 KKKAETVKRYAELRAQLKAEKDYIGLTMLPRNASPTRTVNRCLVSGRRRAFIRRFKLSRISFRELANAGMIPGVTKSSW 89          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_ACISJ (30S ribosomal protein S14 OS=Acidovorax sp. (strain JS42) GN=rpsN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            KR  LA K+  K    K++  D     E RE     L +LPRN++ TR RNRC  TGR R  + +F + R   R LA  G + GV KASW
Sbjct:   12 KREKLAAKYAAKYAELKAIAGDAKRSDEEREAARLGLQKLPRNANPTRQRNRCEITGRPRGTFRQFGLGRAKIRELAFAGDIPGVTKASW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RR14_GUITH (30S ribosomal protein S14, chloroplastic OS=Guillardia theta GN=rps14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + KR  L +K+E KR   KS  +      E  E Y  K+  +PRN+  +RLRNRC  TGRSR  Y  F +SR V R + +  +L GV K+SW
Sbjct:    1 MAKKSMIERERKREELVSKYEKKRLELKSKLKKTAEYEEKLEVYK-KIQEIPRNAFPSRLRNRCWVTGRSRGYYRDFGLSRHVLREMVHDCLLPGVTKSSW 100          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RR14_CUSOB (30S ribosomal protein S14, plastid OS=Cuscuta obtusiflora GN=rps14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 2
Query:  176 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            D KR+ L  K+ L R+  K     V+L +E RE Y+ KL   PRNS+ TRLR RC  TGR RA Y  F +S  + R +    +L G  ++SW
Sbjct:   10 DKKRKKLEQKYHLIRRSSKQEIHKVSLLSEKREFYV-KLQSSPRNSAPTRLRRRCFVTGRPRANYRDFELSGHILREMVEACLLPGAIRSSW 100          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RS14_AKKM87.954e-1145.5730S ribosomal protein S14 OS=Akkermansia muciniphi... [more]
RS14_ACISJ7.954e-1142.2230S ribosomal protein S14 OS=Acidovorax sp. (strai... [more]
RR14_GUITH7.954e-1141.5830S ribosomal protein S14, chloroplastic OS=Guilla... [more]
RR14_CUSOB7.954e-1142.3930S ribosomal protein S14, plastid OS=Cuscuta obtu... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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