FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14231 contig Ccv1_Contig14231:1..681. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BRUA2 (30S ribosomal protein S14 OS=Brucella abortus (strain 2308) GN=rpsN PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  170 IEDHKRR-LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +E +KRR  L  +  +KR   K++  D  LP E R +   +LA LPRNS+  R+RNRC  +GR R  Y K +MSRI  R L + G + GV K+SW
Sbjct:    7 VEKNKRREKLVKRHAVKRARLKAIVMDQGLPLEERFRATIRLAELPRNSAKVRIRNRCEVSGRPRGYYRKLKMSRIALRQLGSLGQIPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BRUA1 (30S ribosomal protein S14 OS=Brucella abortus (strain S19) GN=rpsN PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 2
Query:  170 IEDHKRR-LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +E +KRR  L  +  +KR   K++  D  LP E R +   +LA LPRNS+  R+RNRC  +GR R  Y K +MSRI  R L + G + GV K+SW
Sbjct:    7 VEKNKRREKLVKRHAVKRARLKAIVMDQGLPLEERFRATIRLAELPRNSAKVRIRNRCEVSGRPRGYYRKLKMSRIALRQLGSLGQIPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHILW (30S ribosomal protein S14 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++ +RR        KR   K++  +  LP E R K   KLA LPR+ S TR+RNRC  +GR RA Y K RMSRI  R L N G + G+ K+SW
Sbjct:    9 KNKRRRTTVANQAAKRAALKAIIMNQALPIEERFKASIKLASLPRDGSKTRIRNRCEVSGRPRAYYRKLRMSRIALRELGNLGKVPGIVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHIEC (30S ribosomal protein S14 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++ +RR        KR   K++  +  LP E R K   KLA LPR+ S TR+RNRC  +GR RA Y K RMSRI  R L N G + G+ K+SW
Sbjct:    9 KNKRRRTTVANQAAKRAALKAIIMNQALPIEERFKASIKLASLPRDGSKTRIRNRCEVSGRPRAYYRKLRMSRIALRELGNLGKVPGIVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_RHIE6 (30S ribosomal protein S14 OS=Rhizobium etli (strain CIAT 652) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 2
Query:  173 EDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++ +RR        KR   K++  +  LP E R K   KLA LPR+ S TR+RNRC  +GR RA Y K RMSRI  R L N G + G+ K+SW
Sbjct:    9 KNKRRRTTVANQAAKRAALKAIIMNQALPIEERFKASIKLASLPRDGSKTRIRNRCEVSGRPRAYYRKLRMSRIALRELGNLGKVPGIVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_NITHX (30S ribosomal protein S14 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLAT-KFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE + RR   T     KR   K++  D   P E R     KLA +PRNSS TR+RNRC  TGR R+ Y K ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRKRMTGNAAAKRARLKTIIADKTKPMEERFAATLKLAEMPRNSSATRIRNRCELTGRPRSNYRKTKLSRIALRDLGSRGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BRASB (30S ribosomal protein S14 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K ++E +++R+ +A     KR   K++  D   P E R     KLA +PRNSS TR+RNRC  TGR R+ Y K ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSVEKNNRRKRMAKNAAPKRARLKAIIADKTKPMEERFAATLKLAEMPRNSSATRIRNRCELTGRPRSNYRKNKLSRIALRELGSKGLVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BARBK (30S ribosomal protein S14 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  170 IEDHKRR-LLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +E +KRR ++A ++  +R   K++  D  +  E R K   +LA LPRNS+  R+RNRC  TGR RA Y K +MSRI  R L + G + GV K+SW
Sbjct:    7 VEKNKRREMMAKRYAARRARLKAIVMDQKVSLEERFKASIQLAELPRNSARVRVRNRCEVTGRPRAYYRKLQMSRIALRELGSLGHIPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_ANAPZ (30S ribosomal protein S14 OS=Anaplasma phagocytophilum (strain HZ) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            KR  ++     KRK   ++ +D +L    R     KL+++PR+SS+ R+RNRC+ TGR R  Y KF+MSRIV R L + G + G+ K+SW
Sbjct:   12 KRVAISAALSEKRKALVAIIKDESLSMSERFAAQLKLSKMPRDSSYIRIRNRCLITGRPRGYYRKFKMSRIVLRQLGSIGQIPGLTKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_NITWN (30S ribosomal protein S14 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsN PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  152 VSEKRNIE-DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE +++RR +      KR   K++  D   P E R     KLA +PRNSS TR+RNRC  TGR R+ Y K ++SRI  R L ++G++ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRRRMNRNAAAKRARLKAIIGDKTKPMEERFAATLKLAEMPRNSSATRIRNRCELTGRPRSNYRKNKLSRIALRDLGSRGLVPGLVKSSW 101          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RS14_BRUA22.023e-1444.2130S ribosomal protein S14 OS=Brucella abortus (str... [more]
RS14_BRUA12.023e-1444.2130S ribosomal protein S14 OS=Brucella abortus (str... [more]
RS14_RHILW2.642e-1445.1630S ribosomal protein S14 OS=Rhizobium leguminosar... [more]
RS14_RHIEC2.642e-1445.1630S ribosomal protein S14 OS=Rhizobium etli (strai... [more]
RS14_RHIE62.642e-1445.1630S ribosomal protein S14 OS=Rhizobium etli (strai... [more]
RS14_NITHX2.642e-1442.5730S ribosomal protein S14 OS=Nitrobacter hamburgen... [more]
RS14_BRASB2.642e-1440.5930S ribosomal protein S14 OS=Bradyrhizobium sp. (s... [more]
RS14_BARBK2.642e-1444.2130S ribosomal protein S14 OS=Bartonella bacillifor... [more]
RS14_ANAPZ2.642e-1442.2230S ribosomal protein S14 OS=Anaplasma phagocytoph... [more]
RS14_NITWN3.450e-1441.5830S ribosomal protein S14 OS=Nitrobacter winograds... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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