FC921074

Overview
NameFC921074
Unique NameFC921074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14231 contig Ccv1_Contig14231:1..681. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_THICR (30S ribosomal protein S14 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  176 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            + KR  +  K+  KR   K    D++L  E R + + KLA+LPRN+S  R +NRC  TGR   VY KF +SR + R LA QG + G++KASW
Sbjct:   10 EKKRAKMVAKYSAKRAELKKASVDMSLSFEERMEAMDKLAKLPRNASPVRQQNRCRLTGRPHGVYRKFGLSRNMLRQLAMQGDVPGLRKASW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_NEOSM (30S ribosomal protein S14 OS=Neorickettsia sennetsu (strain Miyayama) GN=rpsN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  170 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            ++D ++R LA +   KR   +++  D  +  + R     KL  LPRNSS  R +NRC  TGR R  Y KF +SRI  R LAN G L GV K+SW
Sbjct:    8 VKDERKRALACRSREKRSAVRNMRNDKTISLKERVAIQAKLNSLPRNSSPARSKNRCSITGRPRGYYRKFGISRIQLRVLANWGKLPGVVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_GRABC (30S ribosomal protein S14 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsN PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  185 RRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            R  +A++ + KR   K++  D +LP E R +   +LA+LPRN +  R+R RC  TGR RA Y KF++ R+  R LA+ G + G+ KASW
Sbjct:   13 RERMASRDKAKRAALKAIVMDRSLPVEDRFEATLRLAQLPRNGAANRVRLRCELTGRPRANYRKFKLCRVALRDLASSGQIPGLVKASW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BRAJA (30S ribosomal protein S14 OS=Bradyrhizobium japonicum GN=rpsN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATKFEL-KRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K +IE + RR    K    KR+  K++  D  LP E R     KLA +PRNSS TR+R RC  +GR R+ Y K ++SRI  R L ++GM+ G+ K+SW
Sbjct:    1 MAKKSSIEKNNRRKRMVKNAAPKRERLKAIIADKTLPMEERFAATLKLAEMPRNSSATRVRLRCELSGRPRSNYRKNKLSRIALRELGSKGMVPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_BEII9 (30S ribosomal protein S14 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsN PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K ++E +K R  L  ++  +R   K++  D  L  E R +   KLA LPRNS+  RLRNRC  +GR RA   K +MSRI  R L +QG++ G+ K+SW
Sbjct:    1 MAKKSSVEKNKHRAQLVKQYAGRRARLKAIANDETLSMEERFEARLKLAELPRNSAPVRLRNRCEISGRPRAFTRKMKMSRIAVRELGSQGLIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_PROA2 (30S ribosomal protein S14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rpsN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  176 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            + KR+ L  K+  KR+  K+   D              L++LPRNSS TR+RNRC+ TGR R VYEKF + R +FR LA +G + GVKKASW
Sbjct:   10 NEKRKALVEKYAAKREELKNA-GDYEA-----------LSKLPRNSSATRVRNRCVLTGRGRGVYEKFGLCRHMFRKLALEGKIPGVKKASW 89          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_OLICO (30S ribosomal protein S14 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRLLATK-FELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K ++E + RR    K    KR   K++  D   P E R     KLA +PRNSS TR++NRC  +GR  +VY K +MSRI  R   ++G++ G+ K+SW
Sbjct:    1 MAKKSSVEKNNRRQRMVKNAAAKRARLKAIIADKTKPMEERFAATMKLAEMPRNSSATRIKNRCEISGRPHSVYRKTKMSRIAIRDFGSRGLIPGLVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_ACICJ (30S ribosomal protein S14 OS=Acidiphilium cryptum (strain JF-5) GN=rpsN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  182 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +R  +A +   KR   K++  D +LP E R     KLA+LPRN + TR+R RC  TGR+R  Y KF++ R+  R LA+ G + G+ K+SW
Sbjct:   12 RREKMAARDAAKRAALKAIVNDRSLPVEDRFDATLKLAQLPRNGAKTRVRLRCELTGRARGNYRKFKLCRVALRDLASAGQIPGMVKSSW 101          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_WOLPM (30S ribosomal protein S14 OS=Wolbachia pipientis wMel GN=rpsN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  152 VSEKRNIEDHKRRL-LATKFELKRKLYKSLYRDVNLPTEVREKYLCKLAR-LPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            +++K  IE + RR+ L  +++ KR+  KS+  + NL    R     KL + LPRNSS T++RNRC  TGR R VY KF + RIV R L + G + GV K+SW
Sbjct:    1 MAKKSMIERNLRRIKLCDQYKEKREKLKSIINNKNLSIVERFTAQNKLIKKLPRNSSKTKIRNRCALTGRPRGVYRKFGLCRIVLRDLCSFGQIPGVTKSSW 102          
BLAST of FC921074 vs. ExPASy Swiss-Prot
Match: RS14_SPHAL (30S ribosomal protein S14 OS=Sphingopyxis alaskensis GN=rpsN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  140 KMSTVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 451
            K+S+V++     + +R+ L  K+  +    K++  D +L    R     K+A +PRN + TR+RNRC  TGR RA Y KFR+ R+  R LAN+G++ GV K+SW
Sbjct:    3 KLSSVNK-----NERRKKLVKKYAGRYAKLKAIAADSSLDDGERLIARLKMAEIPRNGNPTRIRNRCELTGRPRAYYRKFRLCRVQLRDLANKGLIPGVVKSSW 101          
The following BLAST results are available for this feature:
BLAST of FC921074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
RS14_THICR1.004e-1344.5730S ribosomal protein S14 OS=Thiomicrospira crunog... [more]
RS14_NEOSM1.004e-1343.6230S ribosomal protein S14 OS=Neorickettsia sennets... [more]
RS14_GRABC1.004e-1342.7030S ribosomal protein S14 OS=Granulibacter bethesd... [more]
RS14_BRAJA1.004e-1342.5730S ribosomal protein S14 OS=Bradyrhizobium japoni... [more]
RS14_BEII91.004e-1341.5830S ribosomal protein S14 OS=Beijerinckia indica s... [more]
RS14_PROA21.311e-1346.7430S ribosomal protein S14 OS=Prosthecochloris aest... [more]
RS14_OLICO1.311e-1339.6030S ribosomal protein S14 OS=Oligotropha carboxido... [more]
RS14_ACICJ1.311e-1342.2230S ribosomal protein S14 OS=Acidiphilium cryptum ... [more]
RS14_WOLPM1.712e-1344.1230S ribosomal protein S14 OS=Wolbachia pipientis w... [more]
RS14_SPHAL1.712e-1339.4230S ribosomal protein S14 OS=Sphingopyxis alaskens... [more]

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Properties
Property NameValue
Genbank descriptionC32202G09EF RVDevelopN Citrus clementina cDNA clone C32202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921074 ID=FC921074; Name=FC921074; organism=Citrus clementina; type=EST; length=681bp
GGAAACTAGGTTAGATTAAGTTCTCAGAAAACTTAAAACCCGTGTTCCTC
TGTCTGCCTGTCTTTCTGTCTCCATGGCTCTTGCTTTCTCCCGTGAAAAG
ATCTTAAGTGCAACTTCTCAGTGCATGAACTTCTGGCGGAAAATGAGTAC
GGTGTCGGAGAAGCGAAACATAGAAGATCACAAACGCAGATTGCTGGCTA
CTAAATTCGAATTGAAGCGAAAGCTTTACAAATCCCTTTACAGAGATGTC
AATCTTCCCACCGAGGTGCGTGAGAAATACCTCTGTAAGTTAGCCCGTTT
GCCGAGAAACAGTTCCTTTACACGCCTAAGAAACCGATGTATTTTCACTG
GTCGATCTCGCGCCGTGTACGAGAAATTCAGAATGTCTCGAATCGTTTTT
CGCAGTTTGGCAAATCAAGGCATGTTGATGGGCGTCAAGAAAGCTTCTTG
GTAGCCTGAGCTTTGGTAGGTATTTTACTGGAAAATATCCAATGAAATAA
TTGGGGTCTGGCCTGCGTATGTTTATTCGGGGCGTTTTGTAAGTTTTCAT
ACTTTGTGAAATTATTATTTATTTTGGCCCTGTTAATCATTTTTTTTTGC
TTAAATTGATATGAATATGCCATACACAGTTCAGTGAAATTGGGAGACTT
GATAATTTTGAAGATGTGTGTTATTGTATTG
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