FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_DEIRA (Pseudouridine-5'-phosphate glycosidase OS=Deinococcus radiodurans GN=psuG PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.961e-50
Identity = 111/182 (60.99%), Postives = 129/182 (70.88%), Query Frame = 2
Query:  116 PIDSLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            P +    + + + PEV+ ALS G  VVALESTIISHGMPYPQN E A+ VE IVR+NGAVPATIA+L G   VGLS +ELE LA      QK + RD+   VA  G+GATTV++TM  A++ GI VF TGG GGVHR    TMDIS+DL EL RT V VVSAG+KSILDI  TLE LET GV
Sbjct:    5 PSNDRLHSYLDLQPEVAAALSQGRPVVALESTIISHGMPYPQNVEMARGVEQIVRDNGAVPATIAVLGGRLKVGLSADELELLAT-DKAVQKISTRDLPVTVALGGHGATTVASTMRIAALAGIRVFATGGTGGVHRGAGETMDISADLLELARTDVCVVSAGVKSILDIGLTLEVLETQGV 185          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ALKMQ (Pseudouridine-5'-phosphate glycosidase OS=Alkaliphilus metalliredigens (strain QYMF) GN=psuG PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.479e-50
Identity = 104/173 (60.12%), Postives = 131/173 (75.72%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            ++ +PEV +A++ G  +VALESTIISHGMPYPQN ETAK+VE ++R  GAVPATIAI++G   VGL+ EEL  L +      K +RRD+  ++A   NGATTV++TM  A++ GI VFVTGGIGGVHR  + T+DIS+DL EL +T VAVV AG+KSILDI  TLE LETHGV
Sbjct:    8 LEYAPEVKKAIAEGRPIVALESTIISHGMPYPQNVETAKKVEDMIREGGAVPATIAIVKGKIKVGLTEEELMFLGQ-SKDVVKASRRDLPLIIAKELNGATTVASTMIIAALAGIKVFVTGGIGGVHRGAQETLDISADLMELAQTNVAVVCAGVKSILDIGLTLEVLETHGV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THETN (Pseudouridine-5'-phosphate glycosidase OS=Thermoanaerobacter tengcongensis GN=psuG PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.462e-49
Identity = 108/175 (61.71%), Postives = 126/175 (72.00%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + +S EV  AL     VVALESTIISHGMPYPQN ETA+ +E IVR NGAVPATIAI+ G   +GL+ EELE +     +  K ++RD+  V+A   N ATTVSATM  A++ GI VFVTGGIGGVHR  E T DIS+DL EL  T VAVV AG K+ILD+PRTLEYLET GV V
Sbjct:    5 IDLSEEVKSALEERRPVVALESTIISHGMPYPQNIETARALEEIVRENGAVPATIAIIGGKIKIGLNEEELEFMGT-SKEILKASKRDLPVVLAKGLNAATTVSATMICANLAGIKVFVTGGIGGVHRGAEETFDISADLQELANTNVAVVCAGAKAILDLPRTLEYLETFGVPV 178          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SOLUE (Pseudouridine-5'-phosphate glycosidase OS=Solibacter usitatus (strain Ellin6076) GN=psuG PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.462e-49
Identity = 106/176 (60.23%), Postives = 130/176 (73.86%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSK-AQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +KI PEV  AL     VVALESTII+HGMPYP+N  TA+ +E+ VR  GAVPATIA++ G+ CVGLS +ELE LA  G+K   K +R D+ + +AT+  GATTV+ATM  A++ GI +F TGGIGGVHR  E T DIS+DL E  RT VAVV AG K+ILD+P+TLEYLET GV V
Sbjct:    3 LKIDPEVRRALQGKRPVVALESTIITHGMPYPENLATARSLESQVRAGGAVPATIAVIGGVICVGLSDKELEWLA--GAKNVLKLSRNDLPYAIATQKIGATTVAATMIAANLAGIRIFATGGIGGVHRGAETTFDISADLEEFARTSVAVVCAGAKAILDLPKTLEYLETRGVPV 176          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_RHOCS (Pseudouridine-5'-phosphate glycosidase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=psuG PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.215e-49
Identity = 107/177 (60.45%), Postives = 129/177 (72.88%), Query Frame = 2
Query:  137 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + + I PEV+ AL  G  VVALEST+ISHG+P P N ETA+ +EA VR NGAVPATIA+L+G   VGL  E+++RLA  G+   K +RRD+  V+A   +GATTV+ATM  A + GI VF TGGIGGVHR  E T DIS+DL EL  T VAVV AG K+ILD+PRTLEYLET GV V
Sbjct:    3 DFLSIHPEVAAALKAGRPVVALESTLISHGLPAPANLETAQAIEAAVRANGAVPATIAVLDGRIRVGLDAEDMQRLAAPGTA--KVSRRDLPLVLAKGADGATTVAATMIAADLAGIAVFATGGIGGVHRGVETTGDISADLEELATTSVAVVCAGAKAILDLPRTLEYLETRGVPV 177          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_NOCSJ (Pseudouridine-5'-phosphate glycosidase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=psuG PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.199e-49
Identity = 107/176 (60.80%), Postives = 130/176 (73.86%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            L+ ++ EV++AL  G  VVALESTIISHGMPYPQN   A EVE I+R  GAVPATIA+LEG P +GL+ ++LE LA       K + RD+  VVA R +GATTV+ATM  A++ GI VFVTGG+GGVHR  + + D S+DLTELG T VAV+SAG+KSILDI  TLE LET GV V
Sbjct:    7 LLTLTDEVADALRDGAPVVALESTIISHGMPYPQNVAMATEVEGIIRAAGAVPATIAVLEGRPRIGLTADDLELLAS-DEDVAKVSVRDLPFVVARRSHGATTVAATMRLAALAGIRVFVTGGLGGVHRGAQQSFDESADLTELGSTDVAVISAGVKSILDIGLTLERLETLGVPV 181          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_GEOKA (Pseudouridine-5'-phosphate glycosidase OS=Geobacillus kaustophilus GN=psuG PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.355e-49
Identity = 105/172 (61.05%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  152 SPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            S EV++A +    +VALESTIISHGMPYP+N +TAK+VE I+R+ GAVPATIAI      +GL+  ELE+L       +K +RRD+ +VVA + +GATTV+ TM  A M GI VF TGGIGGVHR  E TMDIS+DL EL RT VAVV AG KSILD+  TLEYLETHGV V
Sbjct:    8 SEEVAQAKAEKKPIVALESTIISHGMPYPENVQTAKDVERIIRDRGAVPATIAIFNEKIKIGLTEGELEQLGT-SHDVEKVSRRDLPYVVAMKKHGATTVAGTMICAEMAGIRVFATGGIGGVHRGAEQTMDISADLQELARTNVAVVCAGAKSILDLGLTLEYLETHGVPV 178          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_RALEJ (Pseudouridine-5'-phosphate glycosidase OS=Ralstonia eutropha (strain JMP134) GN=psuG PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 106/180 (58.89%), Postives = 131/180 (72.78%), Query Frame = 2
Query:  128 LAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            LA++ + +S  V+ A + G  +VALESTII+HGMPYP+N  TA EVEA++   GA PATIA+++G   VGLS +ELERL + G KA K +RRD+  V+ +   GATTV+ TM  A++ GI VFVTGGIGGVHR  + T DIS+DL EL RT VAVV AG KSILDI  TLEYLET GV V
Sbjct:    5 LAQSWLTLSAPVAAARAAGRPLVALESTIIAHGMPYPENVRTAHEVEALILELGAEPATIALIDGRIRVGLSDDELERLGRSG-KAHKVSRRDLPAVLTSGELGATTVAGTMICAALAGIEVFVTGGIGGVHRGAQETFDISADLQELARTSVAVVCAGAKSILDIGLTLEYLETQGVPV 183          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_METNO (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=psuG PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            L+  +PEV  AL  G  VVALESTI++HGMP+PQN ETA+ V A+VR NGAVPA +A++ G   +GL  E L+ L     +  K +R D+ H VA   +G+TTV+ATM  A   GI VF TGGIGGVHR  E T+DIS+DL EL RTPVAVV AG K+ILD+PRTLEYLET GV V
Sbjct:    5 LLDFAPEVRSALDAGAPVVALESTIVTHGMPHPQNVETARAVAAVVRANGAVPAIVAVVAGRIRIGLPEEILDWLGT-AKEVLKLSRADLPHAVAAGLHGSTTVAATMICAHRAGIRVFATGGIGGVHRGVEETLDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG1_RHIL3 (Pseudouridine-5'-phosphate glycosidase 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 102/175 (58.29%), Postives = 123/175 (70.29%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +  S EV+ A   G  +VALESTII+HGMPYP N E A+ VEAI+R  GAVPATIA++ G   +GL   ELE+LAK  ++  K +R D+A  +A R  GATTV+ATM  A+  GI VF TGGIGGVHR  E + DIS+DL EL RT V VV AG K+ILDIP+TLE LET GV V
Sbjct:   20 IAYSKEVASAKQRGAPLVALESTIITHGMPYPGNIEMARSVEAIIREQGAVPATIAVIHGTLHIGLEAAELEQLAK-ATEVMKVSRADLAFAIAERRTGATTVAATMIAAARAGIRVFATGGIGGVHRGAEESFDISADLEELARTGVIVVCAGAKAILDIPKTLEVLETRGVPV 193          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_DEIRA4.961e-5060.99Pseudouridine-5'-phosphate glycosidase OS=Deinococ... [more]
PSUG_ALKMQ6.479e-5060.12Pseudouridine-5'-phosphate glycosidase OS=Alkaliph... [more]
PSUG_THETN2.462e-4961.71Pseudouridine-5'-phosphate glycosidase OS=Thermoan... [more]
PSUG_SOLUE2.462e-4960.23Pseudouridine-5'-phosphate glycosidase OS=Solibact... [more]
PSUG_RHOCS3.215e-4960.45Pseudouridine-5'-phosphate glycosidase OS=Rhodospi... [more]
PSUG_NOCSJ4.199e-4960.80Pseudouridine-5'-phosphate glycosidase OS=Nocardio... [more]
PSUG_GEOKA9.355e-4961.05Pseudouridine-5'-phosphate glycosidase OS=Geobacil... [more]
PSUG_RALEJ3.555e-4858.89Pseudouridine-5'-phosphate glycosidase OS=Ralstoni... [more]
PSUG_METNO1.351e-4758.52Pseudouridine-5'-phosphate glycosidase OS=Methylob... [more]
PSUG1_RHIL31.351e-4758.29Pseudouridine-5'-phosphate glycosidase 1 OS=Rhizob... [more]

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Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
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