FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_JANSC (Pseudouridine-5'-phosphate glycosidase OS=Jannaschia sp. (strain CCS1) GN=psuG PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.764e-47
Identity = 104/172 (60.47%), Postives = 128/172 (74.42%), Query Frame = 2
Query:  152 SPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            SPEV+EA + G  +VALESTII+HGMPYPQN +TA+ VEA VR  GAVPATIAI++G   +GL+  ELE LA+    A K +R D+A  +A  G GATTV+ATM  A++ GI VF TGGIGGVH+  E T DIS+DL EL  TPV V++AG K+ILD+P+TLE LET GV V
Sbjct:    8 SPEVAEARAAGAPLVALESTIITHGMPYPQNLDTARAVEAEVRAAGAVPATIAIMDGRMHIGLTGTELEVLAQADGVA-KLSRADLAACLARGGVGATTVAATMICAALAGIHVFATGGIGGVHKGAEDTFDISADLRELAHTPVTVIAAGAKAILDLPKTLEVLETLGVPV 178          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG2_RHIL3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=psuG2 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.304e-47
Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 2
Query:  146 KISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++S E++EA++ G  VVALESTII+HGMPYP N ETA  VE ++R NGA+PATIA+++G   VGL  +ELE LA+      K + RD+A  +    +  TTVSATM  A + GI VF TGG+GGVHR  E T DIS+DLTELGRT  AVV AG+KSILDI +TLEYLET  V V
Sbjct:    7 RLSREMAEAIAAGSPVVALESTIITHGMPYPANLETALGVETVIRENGAIPATIAVVKGELRVGLEHDELEELAQ-SKGIVKASGRDLAVAMIRGQSAGTTVSATMLMADLAGIDVFATGGVGGVHRGAEQTFDISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ROSS1 (Pseudouridine-5'-phosphate glycosidase OS=Roseiflexus sp. (strain RS-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.010e-47
Identity = 100/177 (56.50%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQ--KTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + +S EV  AL  G  VVALEST+ISHG+PYP N E A  +E  VR+ GAVPAT+ I+ G+P VG+    + R A         K +RRDI +VVA  G+GATTV+ATM  A + G+ VF TGGIGGVHR    T D+S+DLTEL RTPV VV AG K+ILD+P TLEYLET GV V
Sbjct:   12 IAVSAEVQAALDAGQPVVALESTVISHGLPYPHNLELALAMEQEVRDQGAVPATVGIVAGVPTVGMDAAAIRRFAHPDPHHPPLKVSRRDIGYVVAAGGDGATTVAATMALAHLAGVQVFATGGIGGVHRGARETWDVSADLTELERTPVLVVCAGAKAILDLPATLEYLETGGVPV 188          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_PARDP (Pseudouridine-5'-phosphate glycosidase OS=Paracoccus denitrificans (strain Pd 1222) GN=psuG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.010e-47
Identity = 102/177 (57.63%), Postives = 126/177 (71.19%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKL-GSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            L+ +SPE S+AL+    +VALESTII+HGMPYPQN E A++VEA VR  GAVPATIA++ G   VGL  E LE LA     +  K +R D+A  +A    GATTV+ATM  A + GI VF TGGIGGVHR  E + DIS+DL EL ++PV VV+AG K+ILD+P+TLE LET GV V
Sbjct:    4 LIALSPETSQALADRQPLVALESTIITHGMPYPQNLEVAQQVEAAVREEGAVPATIAVMGGRIRVGLDAEALEALASTPAEQVMKLSRADLAACLALGRTGATTVAATMICAHLAGIEVFATGGIGGVHRGAETSFDISADLQELAQSPVTVVAAGAKAILDLPKTLEVLETLGVPV 180          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ACHLI (Pseudouridine-5'-phosphate glycosidase OS=Acholeplasma laidlawii (strain PG-8A) GN=psuG PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.134e-47
Identity = 103/173 (59.54%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            + I P+V +AL  G  VVALESTII+HGMPYP+N ETA  VE IV  NGA+PATIAI++G   VGL+  EL  L KL S   K ++RDI + V  + +GATTVSAT+  A MVGI VF TGGIGGVH+    T DIS DL E+    VAVVSAG K+ILD+  TLEYLET GV
Sbjct:    5 IDIHPKVLDALRSGKPVVALESTIIAHGMPYPKNVETALNVEKIVEQNGAIPATIAIIDGRIKVGLNPNELTSLGKL-SNVLKVSKRDIPYCVIKKYSGATTVSATILIADMVGIKVFATGGIGGVHKDAAATFDISRDLEEISEKQVAVVSAGAKAILDLDLTLEYLETKGV 176          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_PETMO (Pseudouridine-5'-phosphate glycosidase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=psuG PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.756e-47
Identity = 102/175 (58.29%), Postives = 123/175 (70.29%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++I  EV +AL     +VALESTIISHGMPYPQN E AK VE  +R  GAVPATIAI++G   VGLS EELE +A       K +R D+  ++A   N ATTV+ATM  A + GI VFVTGGIGGVHR+ + T DIS+DL EL +T VAV+SAG K+ILD+  T EYLET GV V
Sbjct:    7 LEIKEEVYQALKENRPIVALESTIISHGMPYPQNVEVAKNVEETIRERGAVPATIAIIDGKMKVGLSKEELEFMAT-SKNILKASRMDLPVILAKGFNAATTVAATMIIAELAGIKVFVTGGIGGVHRNAQETFDISADLQELAKTNVAVISAGPKAILDLQLTKEYLETFGVPV 180          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_HAEPS (Pseudouridine-5'-phosphate glycosidase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=psuG PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 99/177 (55.93%), Postives = 127/177 (71.75%), Query Frame = 2
Query:  137 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            N + +S EV   ++ G  +VALESTIISHGMPYPQN   A+EVE I+R+NGAVPATIAI++G   +GLS +ELE        A K +RRD+  ++A++  GATTV++TM  A + GI  FVTGG+GGVH+  E T+DIS+DL EL +T V V+ AG KSILD+  TLEYLET GV V
Sbjct:    3 NYLILSDEVQRGMAQGLPIVALESTIISHGMPYPQNVAMAREVEQIIRDNGAVPATIAIIDGKIRIGLSDDELELFGSSKGIA-KVSRRDLPQIIASKKLGATTVASTMICAHLAGIKFFVTGGLGGVHKGWETTLDISADLDELAQTSVTVICAGAKSILDLDATLEYLETKGVPV 178          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_MYCAP (Pseudouridine-5'-phosphate glycosidase OS=Mycoplasma agalactiae (strain PG2) GN=psuG PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.494e-46
Identity = 102/173 (58.96%), Postives = 117/173 (67.63%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            +  S EV  AL H   VVALESTII+HGMPYP+N E A  VE I+R  GAVPATIAI+ G+  VGL  +E+  LAKL     KT++RD  +V+A + NG TTVS T+  A  VGIPVF TGGIGGVHR  E T DIS DL EL    V VV AG K ILD+  TLEYLET GV
Sbjct:    3 IVFSKEVESALKHKRPVVALESTIITHGMPYPKNVEMALNVENIIRKQGAVPATIAIINGIIHVGLENDEINELAKL-KDVIKTSKRDFGYVLANKKNGGTTVSGTVLVAQKVGIPVFATGGIGGVHRGAEITFDISRDLDELSTNNVLVVCAGAKLILDLGLTLEYLETKGV 174          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_HERA2 (Pseudouridine-5'-phosphate glycosidase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=psuG PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.951e-46
Identity = 98/173 (56.65%), Postives = 124/173 (71.68%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++PEV  A ++G  VVALEST+ISHG+PYP N E A ++EA VR  GAVPATIA+++G   VGL+ E++E  A   +   K +RRDI + VA   +GATTV+ATM  A + GI VF TGGIGGVHR    T D+S+DL ELG++ V VV AG KSILD+P TLE LET+GV V
Sbjct:    6 LAPEVQAAFANGQPVVALESTVISHGLPYPHNREIALQLEATVRAGGAVPATIAVIQGQVHVGLTNEQIEHFAT-ATDVLKLSRRDIGYAVAAGRDGATTVAATMAIAELAGIQVFATGGIGGVHRGARDTWDVSADLGELGKSSVLVVCAGAKSILDLPATLEVLETYGVPV 177          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_BRAHW (Pseudouridine-5'-phosphate glycosidase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=psuG PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.951e-46
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 2
Query:  134 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +  + IS EV EAL    AVVALESTIISHGMPYP+N E+A   E  +R N AVPATIAI++G   VGL+ EELE +        K++RRD+  ++A + +GATTV+ TM  AS+ GI VF TGGIGGVHR+ + T DIS+DL EL +T VAVV AG KSILDI  T+EYLET G+ V
Sbjct:    5 EEFLDISEEVKEALHEKKAVVALESTIISHGMPYPENVESALNSEKNIRENNAVPATIAIIKGRIKVGLNKEELEYMGS-NKNIAKSSRRDLPVMLALKKDGATTVTTTMIGASLAGIKVFATGGIGGVHRYAQETFDISADLQELSKTNVAVVCAGAKSILDIGLTIEYLETFGIPV 181          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_JANSC1.764e-4760.47Pseudouridine-5'-phosphate glycosidase OS=Jannasch... [more]
PSUG2_RHIL32.304e-4758.05Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizob... [more]
PSUG_ROSS13.010e-4756.50Pseudouridine-5'-phosphate glycosidase OS=Roseifle... [more]
PSUG_PARDP3.010e-4757.63Pseudouridine-5'-phosphate glycosidase OS=Paracocc... [more]
PSUG_ACHLI5.134e-4759.54Pseudouridine-5'-phosphate glycosidase OS=Acholepl... [more]
PSUG_PETMO8.756e-4758.29Pseudouridine-5'-phosphate glycosidase OS=Petrotog... [more]
PSUG_HAEPS1.144e-4655.93Pseudouridine-5'-phosphate glycosidase OS=Haemophi... [more]
PSUG_MYCAP1.494e-4658.96Pseudouridine-5'-phosphate glycosidase OS=Mycoplas... [more]
PSUG_HERA21.951e-4656.65Pseudouridine-5'-phosphate glycosidase OS=Herpetos... [more]
PSUG_BRAHW1.951e-4657.30Pseudouridine-5'-phosphate glycosidase OS=Brachysp... [more]

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Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
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