FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_DINSH (Pseudouridine-5'-phosphate glycosidase OS=Dinoroseobacter shibae (strain DFL 12) GN=psuG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.264e-45
Identity = 98/177 (55.37%), Postives = 124/177 (70.06%), Query Frame = 2
Query:  137 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + V +  +V  AL     VVALESTII+HGMP+P N E AK VE  +R  GA+PATIA+L+G+  +GL  +ELE LAK+   A K +R DI + ++   +  TTV+ATM  A M GI VF TGGIGGVH+  E + DIS+DLTELGRT V VV+AG K+ILD+P+TLE LET GV V
Sbjct:    6 SFVDVHADVRNALETNAPVVALESTIITHGMPFPDNVEMAKAVEEEIRARGAIPATIAVLDGVLKIGLGADELEALAKV-KDALKISRADIGYAISQGKSAGTTVAATMIVAQMAGIRVFATGGIGGVHKGVETSFDISADLTELGRTDVIVVAAGAKAILDVPKTLEVLETQGVSV 181          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ROSDO (Pseudouridine-5'-phosphate glycosidase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=psuG PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.157e-45
Identity = 98/172 (56.98%), Postives = 122/172 (70.93%), Query Frame = 2
Query:  152 SPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            S EV+ A + G  +VALESTII+HGMPYPQN E A++VE  +R  G  PATIA+++G   +GL   +LE LA+    A K +R DIA  +AT G GATTVSATM  A + GI VF TGGIGGVHR  E + D+S+DL EL +TPV VV+AG K+ILD+ +TLE LET GV V
Sbjct:    9 SAEVAAAKAAGRPIVALESTIITHGMPYPQNLEVARQVEDDLRAAGVTPATIAVMDGTLHIGLEAHQLEALAQAKGVA-KLSRADIAACMATGGTGATTVSATMIAAHLAGISVFATGGIGGVHRGAESSFDVSADLLELAQTPVTVVAAGAKAILDVAKTLEVLETQGVPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SYMTH (Pseudouridine-5'-phosphate glycosidase OS=Symbiobacterium thermophilum GN=psuG PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.817e-45
Identity = 105/182 (57.69%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  134 KNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHG----EHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            K L+  +PEV EAL     VVALESTIISHGMPYP+N  TA+EVE IVR+ GAVPATIA++ G   VGL+ EELE LA    +A K + RD+  V+A +  GATTV+ T   A+  GI VFVTGGIGGVHR          D+S+DLT LGRT + VV AG KS+LDI  TLE LET GV V
Sbjct:    2 KYLLSYTPEVREALDRNRPVVALESTIISHGMPYPENLRTAREVEEIVRSQGAVPATIAVIGGRCKVGLTDEELELLA-TSPEAVKVSLRDLPVVLARKSLGATTVATTATIAAAAGIEVFVTGGIGGVHRKSPGDPAQMWDVSADLTVLGRTDITVVCAGAKSVLDIGATLEVLETLGVTV 182          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_RHILO (Pseudouridine-5'-phosphate glycosidase OS=Rhizobium loti GN=psuG PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.679e-45
Identity = 102/179 (56.98%), Postives = 121/179 (67.60%), Query Frame = 2
Query:  131 AKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            A+  + I   V++AL+ G  VVALESTII+HGMPYP N   A  VE I+ + GAVPATIA++ G   +GLS  E E LA  G  A K +R D+   VA    G TTV+ATM  A MVGI VF TGGIGGVH+  E + DIS+DL EL RTPV VVSAG K+ILDI +TLE LET GV V
Sbjct:    6 ARPFIDIHAPVAQALAAGRPVVALESTIITHGMPYPDNGAMAANVEKIISDGGAVPATIAVIGGRIKIGLSDGERESLAMTGD-AMKLSRADLGFAVAQGRTGGTTVAATMIAAEMVGIKVFATGGIGGVHKGAEKSFDISADLDELARTPVIVVSAGAKAILDIEKTLEVLETRGVPV 183          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_LEGPH (Pseudouridine-5'-phosphate glycosidase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=psuG PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.398e-44
Identity = 97/177 (54.80%), Postives = 128/177 (72.32%), Query Frame = 2
Query:  137 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +L++ + EV +A++  + +VALESTIISHGMPYP N  TA EVE I+R  GA+PATIA+ +G   VGL+ E +E LA L  +  K +RRDI+ V++ +   +TTV+ATMF A M  +P+FVTGGIGGVH+    + DIS+DL EL  TPV VV +G KSILD+P+TLE LET GV V
Sbjct:    4 DLLEFNEEVLDAINDKNPIVALESTIISHGMPYPDNLTTAIEVENIIRRQGAIPATIAMHQGKIRVGLTQEVMEHLA-LQKEVIKASRRDISFVLSRKVTASTTVAATMFCAHMAKLPLFVTGGIGGVHQDVTMSFDISADLIELSNTPVTVVCSGAKSILDLPKTLEVLETFGVPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_COPPD (Pseudouridine-5'-phosphate glycosidase OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=psuG PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.546e-43
Identity = 92/176 (52.27%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +++I+P V EA+     VVALESTII+HGMPYP N  TA EVE +++  GAVPATI ++ G+  VGLS EE+  L++      K + +D++   A + +G TTVSATMF +   GI VF TGGIGGVHR    + D+S+DL  LG  P+ VV AG K+ILD+P TLEYLET GV V
Sbjct:    1 MLQIAPHVKEAIETLKPVVALESTIITHGMPYPANLHTALEVEQVIKEAGAVPATIGVINGIIKVGLSEEEITYLSQ-AKDLHKISLKDLSVAAAKKLSGGTTVSATMFASYKAGIQVFATGGIGGVHRDARESFDVSTDLEALGSIPITVVCAGAKAILDLPATLEYLETKGVLV 175          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_RUBXD (Pseudouridine-5'-phosphate glycosidase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=psuG PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.019e-43
Identity = 93/175 (53.14%), Postives = 119/175 (68.00%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            V+ +PEV+EAL  G  VVALEST+ISHG+P P N   A+ +E  VR  GAVPAT+ ++ G+  VGL  EELE LA    +  K + RD+    AT  +GATTV+AT   A++ GI +F TGG+GGVHR    + D+S+DL  L R PVAVV +G+KSILD+P TLE LET GV V
Sbjct:    4 VQPAPEVAEALEGGRPVVALESTLISHGLPRPDNLRVARALEEAVRREGAVPATVGVVGGVARVGLGPEELELLAS--GEVPKLSARDLPAAAATGSSGATTVAATAHLAALCGIKLFATGGLGGVHRGARESWDVSADLAALSRAPVAVVCSGVKSILDVPATLEQLETLGVPV 176          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_STRGG (Pseudouridine-5'-phosphate glycosidase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=psuG PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.915e-42
Identity = 95/174 (54.60%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKA-QKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +S EV  ALS G  VVALESTII+HG+P P+N   A+E+E +VR+ GAVPAT+A+L+G   +GL  ++LER+A  G  A +K   RD+A  +A   +GATTVSAT F A+  GI VF TGG+GGVHR      D S+DL  L RT + VV AG+KSILD+P TL+ LET GV V
Sbjct:   25 LSAEVRAALSTGLPVVALESTIIAHGLPRPRNLSVARELEGLVRSAGAVPATVAVLDGRARIGLDGDQLERVA--GDPAVRKLGHRDLAPALAAGADGATTVSATAFLAARAGIGVFATGGLGGVHREWAENQDESADLRLLARTGITVVCAGVKSILDVPATLQRLETLGVPV 196          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_MYXXD (Pseudouridine-5'-phosphate glycosidase OS=Myxococcus xanthus (strain DK 1622) GN=psuG PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 89/175 (50.86%), Postives = 112/175 (64.00%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++ S EV  AL  G  +VALE+++++ G+PYP N   A+  E  +R  GAVPA  AI++G  CVGL   E+ RLA+   +  K A RD A  +ATR  G TTVSAT   A+  GI VF TGGIGGVHR      DIS D+  L R PVAVV AG KS+LD+P+T+E LET GV V
Sbjct:    3 LRFSEEVRRALEAGQPLVALETSVVAQGLPYPDNLAAARACEEAIRRAGAVPAATAIIDGQLCVGLEEPEMRRLAEGKERLLKVASRDFAVAMATRATGGTTVSATCEMAAAAGIRVFSTGGIGGVHRGASEHFDISQDIAALARFPVAVVCAGAKSVLDLPKTMELLETAGVPV 177          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SALTO (Pseudouridine-5'-phosphate glycosidase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=psuG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 96/183 (52.46%), Postives = 121/183 (66.12%), Query Frame = 2
Query:  119 IDSLAKNLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +D++    ++   EV++AL  G  VVALESTI+SHG+P P N   A+E+E  VR+ GAVPATI ++ G   VGL   EL RLA +   A K + RD+A   AT  +GATTV+AT   A+  GI VF TGG+GGVHR    + D S+DLT L RTP+AVV AG+KSILD   TLE LET GV V
Sbjct:   15 LDAVTTFHLRHGVEVADALRVGRPVVALESTIVSHGLPRPDNLRVAREIEQTVRDAGAVPATIGMVAGQLVVGLDDAELTRLATVDDVA-KLSVRDLAVAAATDADGATTVAATSAVAAAAGIRVFATGGLGGVHREAAQSFDESADLTTLARTPIAVVCAGVKSILDSGATLERLETLGVGV 196          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_DINSH1.264e-4555.37Pseudouridine-5'-phosphate glycosidase OS=Dinorose... [more]
PSUG_ROSDO2.157e-4556.98Pseudouridine-5'-phosphate glycosidase OS=Roseobac... [more]
PSUG_SYMTH2.817e-4557.69Pseudouridine-5'-phosphate glycosidase OS=Symbioba... [more]
PSUG_RHILO3.679e-4556.98Pseudouridine-5'-phosphate glycosidase OS=Rhizobiu... [more]
PSUG_LEGPH1.398e-4454.80Pseudouridine-5'-phosphate glycosidase OS=Legionel... [more]
PSUG_COPPD1.546e-4352.27Pseudouridine-5'-phosphate glycosidase OS=Coprothe... [more]
PSUG_RUBXD2.019e-4353.14Pseudouridine-5'-phosphate glycosidase OS=Rubrobac... [more]
PSUG_STRGG2.915e-4254.60Pseudouridine-5'-phosphate glycosidase OS=Streptom... [more]
PSUG_MYXXD1.889e-4150.86Pseudouridine-5'-phosphate glycosidase OS=Myxococc... [more]
PSUG_SALTO3.223e-4152.46Pseudouridine-5'-phosphate glycosidase OS=Salinisp... [more]

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Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
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