FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_DICZE (Pseudouridine-5'-phosphate glycosidase OS=Dickeya zeae (strain Ech1591) GN=psuG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.223e-41
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 2
Query:  140 LVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            L++ S EV +AL  G  VVALEST+I+HG+PYP N  TA+++EA+VR  GA+PATI I  G   +G+S  ++ER         K + RDI  ++A  G GATTV++++  A + GIP F + GIGGVHR  E +MDIS+DL +  R+ VAVV AG KSILD+  TLEYLET  V
Sbjct:   10 LLRFSDEVKDALHTGKPVVALESTVIAHGLPYPDNVATAQKIEAVVRAEGAIPATIGIENGRFLIGMSDADIERFGATNG-IPKASSRDIPVILAQGGKGATTVASSLVAADLAGIPFFASAGIGGVHRGAEKSMDISADLVQFTRSRVAVVCAGAKSILDLGLTLEYLETQCV 182          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SERP5 (Pseudouridine-5'-phosphate glycosidase OS=Serratia proteamaculans (strain 568) GN=psuG PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.225e-40
Identity = 93/173 (53.76%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            I PEV  AL   HAVVALES +I+HG+ YP N ETA  VEA VR +GAVPATI I +G   VG+  E++ER A     A K +  ++  V+A +  GATTV++++  A + GI  F + GIGGVHR GE +MDISSDL +  RT V VV AG K+ILDI RTLE+LET  V V
Sbjct:   11 IHPEVKAALESRHAVVALESNVITHGLNYPANVETALAVEAAVRRSGAVPATIGICDGEILVGMHREQIERFATTPGIA-KVSSNNLPFVLAQKSMGATTVASSLMLAELAGIGFFASAGIGGVHRGGEDSMDISSDLIQFTRTNVTVVCAGAKNILDIGRTLEFLETQCVPV 182          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG1_PHOLL (Pseudouridine-5'-phosphate glycosidase 1 OS=Photorhabdus luminescens subsp. laumondii GN=psuG1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.728e-40
Identity = 93/174 (53.45%), Postives = 118/174 (67.82%), Query Frame = 2
Query:  146 KISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            K S EV EAL  G  VVALES +I+HG+ YP N  TAK VE  VR +GA+PATI I +G   +G+S E++E+ A   S   K   RDI  V+A+ G GATTV++++  A + GI  F + GIGGVHR  E +MDIS+DLT+L R+ VAVV AG K+ILDI  TLE+LET  V V
Sbjct:   10 KFSLEVKEALESGKPVVALESNVITHGLDYPDNVTTAKNVEQAVRESGAIPATIGIDKGEFLIGMSDEQIEKFAT-ASHVPKVTSRDIPVVLASGGMGATTVASSILAAEIAGIKFFCSAGIGGVHRGAETSMDISADLTQLTRSRVAVVCAGAKNILDIGLTLEFLETWNVPV 182          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THEAB (Pseudouridine-5'-phosphate glycosidase OS=Thermosipho africanus (strain TCF52B) GN=psuG PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.017e-39
Identity = 91/171 (53.22%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGV 661
            IS +V +AL     +VALEST+I+HG+PYP+N + A+E E IV  NG VPATI IL+G   VGLS E+L  L  +     K   R+I++ +A + + ATTVS+T   AS+ GI VF TGGIGGVHR GE   D+S D+ EL +T + VVSAG KSILDI +TLE+LET  V
Sbjct:    3 ISEKVQKALEENKPIVALESTVIAHGLPYPENLKVAQEFEDIVYENGCVPATIGILKGKVIVGLSKEQLIEL--VDDNPIKVGTREISYAIAMKKSAATTVSSTAKIASLAGIKVFATGGIGGVHR-GE--WDVSQDIIELSKTNIIVVSAGCKSILDIKKTLEFLETFQV 168          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_SACEN (Pseudouridine-5'-phosphate glycosidase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=psuG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.554e-38
Identity = 89/177 (50.28%), Postives = 113/177 (63.84%), Query Frame = 2
Query:  137 NLVKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +L  IS EV +AL  G  VVALESTII+HG+P P+N   A++ E  +R+ G VPATI ++ G P VGL+ E++E LA     A K + RD+   VA   +G TTV+AT F A   GI VF TGG+GGVH     T D S+DL  L  TP+ +VSAG KSILD+  TLE LET  + V
Sbjct:    4 SLPVISTEVRQALDAGRPVVALESTIITHGLPRPRNLAVARDAERQLRDAGVVPATIGVVAGTPTVGLTGEQIEELAA-DEAAVKISTRDLPVAVARGASGGTTVAATAFLARKAGIRVFATGGLGGVHHGAATTFDESADLVTLASTPLVLVSAGAKSILDLAATLERLETLNIPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_FERNB (Pseudouridine-5'-phosphate glycosidase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=psuG PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.554e-38
Identity = 87/173 (50.29%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  149 ISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            IS +V +AL  G  V+ALEST+I+HG+PYP N ETAK +E +   NG VPATI IL+G   VG+S E++  +  L  +  K   R+I + V  + + ATTVSATM  A + GI VF TGGIGGVH       D+S D+TE+ ++ V VVSAG KSILD+ +T+E+LET  V V
Sbjct:    3 ISEKVKKALEDGIPVIALESTVIAHGLPYPHNVETAKMLEEMALENGVVPATIGILKGEIIVGMSQEQINEM--LADEPLKIGTREIPYAVGMKKSAATTVSATMRIAKIAGIDVFATGGIGGVH---IGDWDVSQDITEMAKSDVIVVSAGCKSILDVKKTIEFLETFQVTV 170          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_FRAAA (Pseudouridine-5'-phosphate glycosidase OS=Frankia alni (strain ACN14a) GN=psuG PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.704e-38
Identity = 85/175 (48.57%), Postives = 115/175 (65.71%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            + +S  V +AL+ G  VVALEST+I+HG+P P+N + A E+E + R  G  PATIA+++G+P VGL   +L R+A   +   K + RD+    AT   GATTV++T   A+ VGI +F TGG+GGVHR    + D S+DL  L   P+ VVSAG+KSILDI  TLE LET G+ V
Sbjct:    7 IVVSATVRDALAAGAPVVALESTLIAHGLPRPRNRDVAVELEELARARGVTPATIAVIDGVPRVGLDEPDLRRIAD-DANVIKLSVRDLPVACATGWTGATTVASTALLAARVGIRLFATGGLGGVHRGAGDSFDESADLVTLAAMPITVVSAGVKSILDIGATLERLETLGITV 180          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_KOSOT (Pseudouridine-5'-phosphate glycosidase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=psuG PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.077e-36
Identity = 82/159 (51.57%), Postives = 106/159 (66.67%), Query Frame = 2
Query:  191 VVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            +VALEST+I+HG+P+P NFETA  +E  V+  GA+P T+ I+ G   +GL+ +E+E LAK      K    +IA  +A R N ATTVSATM  A   GI VF TGGIGGVHR+     D+S D+ EL +T + VV AG KSILD+ RT+E+LET  V V
Sbjct:    6 IVALESTVIAHGLPWPTNFETAVSMENKVKEKGAIPKTLGIINGEIKIGLTEKEIEHLAK-AKNVMKIGTAEIAAAIALRRNAATTVSATMRLAKNAGIDVFATGGIGGVHRN--VPWDVSQDIMELSKTRMIVVCAGFKSILDVERTIEFLETFQVTV 161          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_ANAD2 (Pseudouridine-5'-phosphate glycosidase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=psuG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.004e-34
Identity = 86/180 (47.78%), Postives = 112/180 (62.22%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHR--HGE---HTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            V+++ EV  AL+ G  VVALE+++++ G+P P N E A+   A VR  GAVPA +A++ G   VG     LERLA    +  K + RD+A + A   +  TTV+AT   A++ GI VF TGGIGGVHR   GE      D+S+DL EL R PV VVSAG K+ILD+  T E LET GV V
Sbjct:    5 VRLAEEVRAALAAGGPVVALETSVVAQGLPPPHNLEAARRCAAAVRAAGAVPAAVAVVAGAVVVGADDAALERLADPARRPAKASARDLAALCAAGRDAGTTVAATAAVAALAGIRVFATGGIGGVHRLAPGEPAAGAADVSADLAELARAPVCVVSAGPKAILDLAATAEALETLGVPV 184          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_CORA7 (Pseudouridine-5'-phosphate glycosidase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.984e-34
Identity = 77/175 (44.00%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  143 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++ S EV  ALS+G  ++ LES ++SHG+PYP+N E     + I+R+NG VPA   I +   C+G S +++E L     K  K + RDIA  +A    GATT SA++    + GI +F T G+GGVHR    T+D+S+DL E+      VVSAG+K  LDIP+T E LE+ GV V
Sbjct:    6 IEYSDEVQNALSNGLPILGLESNVLSHGLPYPRNLEMFNACDEIIRSNGVVPALTFIRDKRICIGASPKDVELLTD-DPKPIKVSARDIALCIAQGKVGATTASASIAICELAGIRIFSTAGLGGVHRDFSETLDVSADLHEISSRKTIVVSAGVKKFLDIPKTSEVLESLGVPV 179          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_DICZE3.223e-4151.15Pseudouridine-5'-phosphate glycosidase OS=Dickeya ... [more]
PSUG_SERP51.225e-4053.76Pseudouridine-5'-phosphate glycosidase OS=Serratia... [more]
PSUG1_PHOLL2.728e-4053.45Pseudouridine-5'-phosphate glycosidase 1 OS=Photor... [more]
PSUG_THEAB3.017e-3953.22Pseudouridine-5'-phosphate glycosidase OS=Thermosi... [more]
PSUG_SACEN2.554e-3850.28Pseudouridine-5'-phosphate glycosidase OS=Saccharo... [more]
PSUG_FERNB2.554e-3850.29Pseudouridine-5'-phosphate glycosidase OS=Fervidob... [more]
PSUG_FRAAA9.704e-3848.57Pseudouridine-5'-phosphate glycosidase OS=Frankia ... [more]
PSUG_KOSOT4.077e-3651.57Pseudouridine-5'-phosphate glycosidase OS=Kosmotog... [more]
PSUG_ANAD21.004e-3447.78Pseudouridine-5'-phosphate glycosidase OS=Anaeromy... [more]
PSUG_CORA74.984e-3444.00Pseudouridine-5'-phosphate glycosidase OS=Coryneba... [more]

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Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
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