FC921124

Overview
NameFC921124
Unique NameFC921124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_GEMAT (Pseudouridine-5'-phosphate glycosidase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=psuG PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33
Identity = 82/169 (48.52%), Postives = 107/169 (63.31%), Query Frame = 2
Query:  161 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            V EAL  G A+VALES++++ G+  P N E A+ +   V   GA+P   AI  G P +GL  E+LER  +     +K + RD+   +A   +GATTV+AT+   ++ G+ VF TGGIGGVHR  +   D S+DL EL RTPV VV AG KSILD+P TLE LET GV V
Sbjct:   14 VFEALERGAALVALESSVLAQGLEPPYNREAARRMTEAVTAVGAIPVITAISRGTPTLGLDDEDLERFLQRDG-VRKVSARDLGIAMADGADGATTVAATLALCALGGLEVFATGGIGGVHR--DAPFDESADLIELSRTPVIVVCAGAKSILDLPATLERLETLGVPV 179          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THET2 (Pseudouridine-5'-phosphate glycosidase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=psuG PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 2
Query:  194 VALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            VALES +++HG+PYP N E A  +E  VR  GA P TIA++ G   VGLS EE+E LA  G  A+K +  ++A ++A   +  TTV+AT+  A + GIPVF TGGIGGVH       D S+DL  L RTP+ VVS+G K+ILD+  TLE LET GV V
Sbjct:    6 VALESAVLTHGLPYPLNLEVALALEEAVREEGATPKTIALVRGEVRVGLSPEEMEALAAGG--AEKASLWNLAALLAQGRSAGTTVAATVHLAHLHGIPVFATGGIGGVH---PEPYDESADLVALSRTPILVVSSGPKAILDLRATLERLETLGVSV 158          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THELT (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=psuG PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.129e-28
Identity = 74/159 (46.54%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  191 VVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCV 667
            ++ALEST+I+HG+P+P N +TA E+E +    G    TI I+ G   VGLS EE+ ++A       K    +I   +A +   ATTVSATM  A +  I VF TGGIGGVH+  +   D+S DL EL RT + VVSAG KSILD+  T+E LET  + V
Sbjct:    4 ILALESTVIAHGLPFPINIDTAVELEELAAETGCSAKTIGIIAGQIKVGLSREEIVQIAS-RKDVLKIGTAEIPFALAKKMWAATTVSATMRIAHLNNIKVFATGGIGGVHKIDQ--WDVSQDLAELSRTRMIVVSAGPKSILDLRSTVEMLETFQITV 159          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THEMA (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga maritima GN=psuG PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 71/164 (43.29%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  161 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 652
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E LET
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLET 161          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THESQ (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga sp. (strain RQ2) GN=psuG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 71/164 (43.29%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  161 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 652
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E LET
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAILVSSGIKSILDVEATFEMLET 161          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THEP1 (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=psuG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  161 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 652
            +   +  G+ VV +E+T+  HG+P  +  E  +  + I R  G     I IL+G   VG+S EELE + + G  A K   R+I   VA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DLTE+  +   +VS+GIKSILD+  T E LET
Sbjct:    3 IESRIEKGNPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLVVIGILKGKIIVGMSEEELETMMREG--ADKIGTREIPIAVAKGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMASSRTILVSSGIKSILDVEATFEMLET 161          
BLAST of FC921124 vs. ExPASy Swiss-Prot
Match: PSUG_THENN (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=psuG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 2
Query:  161 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRHGEHTMDISSDLTELGRTPVAVVSAGIKSILDIPRTLEYLET 652
            V   L      V +E+T+  HG+P  +  E  ++ + I    G   A + +L+G   +G++ +EL  +   GS  +K   R+I   +A   N ATTVSAT+F     GI V VTGG GGVH  G   +DIS DLTE+  + + +VS+GIKSILD+  T E LET
Sbjct:    3 VENRLEKEKPAVGMETTVFVHGLPRKEAIELFRKAKKISEEMGFQLAVVGVLKGKIILGMNEDELTIMMNEGS--EKIGTREIPIALAKGMNAATTVSATIFLCKRFGIDVVVTGGTGGVHPGG---VDISQDLTEMASSRIILVSSGIKSILDVDATFEMLET 161          
The following BLAST results are available for this feature:
BLAST of FC921124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_GEMAT3.230e-3348.52Pseudouridine-5'-phosphate glycosidase OS=Gemmatim... [more]
PSUG_THET29.399e-3351.27Pseudouridine-5'-phosphate glycosidase OS=Thermus ... [more]
PSUG_THELT3.129e-2846.54Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THEMA2.649e-2743.29Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THESQ3.459e-2743.29Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THEP17.707e-2742.68Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THENN2.320e-2339.63Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]

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Properties
Property NameValue
Genbank descriptionC32101D07EF RVDevelopN Citrus clementina cDNA clone C32101D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921124 ID=FC921124; Name=FC921124; organism=Citrus clementina; type=EST; length=672bp
GGGAATTATCTTGCGTCATTCTTCTCGCTCACTTTCAACAAAAATGGCGG
CGTCTTCTTCTGCTTCTTCATCATCGGCTCTCTCAAGATTGTCCAATATT
CAAAATCACTTAAACCCCATTGATTCACTTGCTAAAAATTTAGTGAAGAT
ATCTCCAGAGGTCAGTGAAGCTTTGTCGCATGGCCACGCTGTTGTTGCTC
TTGAATCCACAATTATTTCCCATGGGATGCCGTATCCTCAAAATTTTGAG
ACAGCCAAGGAGGTTGAGGCCATTGTGAGAAATAATGGAGCAGTTCCTGC
AACGATTGCTATTCTAGAGGGCCTTCCATGCGTAGGTTTGAGTACAGAAG
AACTGGAAAGGCTGGCTAAGTTAGGAAGTAAAGCTCAAAAGACAGCTCGG
AGGGACATTGCACATGTTGTGGCTACCAGAGGGAACGGAGCAACTACTGT
TTCCGCGACCATGTTTTTTGCTTCTATGGTTGGCATTCCTGTGTTTGTAA
CTGGGGGAATTGGAGGTGTACATAGGCACGGCGAGCACACTATGGATATT
TCATCAGATCTTACAGAGCTCGGAAGGACTCCAGTGGCCGTCGTCTCTGC
TGGCATAAAGTCAATACTAGATATCCCCAGGACCCTCGAGTATTTGGAAA
CTCATGGAGTTTGTGTTGCTGC
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