FC921141

Overview
NameFC921141
Unique NameFC921141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.158e-35
Identity = 90/250 (36.00%), Postives = 127/250 (50.80%), Query Frame = 2
Query:    8 GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAES------AGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIFD 739
            GV G+  D+WWG VE      ++W  Y    +  +  GLK   +MS H CGGNVGD+V+IP+P WV  + D   ++ Y D+ G  + E +S      P   G T  Q Y++F  +F   F     D I +I +  GP+GELRYPSY   +G W +PG G+ QCY K  ++S + A +S      A    WG T  TD    +   +   FF     G+ + YG  FL+WY  +L +    I + A S FD
Sbjct:   66 GVYGITTDIWWGYVENAGENQFDWSYYKTYADTVRAAGLKWVPIMSTHACGGNVGDTVNIPIPSWVWTK-DTQDNMQYKDEAGNWDNEAVS------PWYSGLT--QLYNEFYSSFASNFSS-YKDIITKIYISGGPSGELRYPSYNPSHG-WTYPGRGSLQCYSKAAITSFQNAMKSKYGTIAAVNSAWG-TSLTDFSQISPPTDGDNFF---TNGYKTTYGNDFLTWYQSVLTNELANIASVAHSCFD 300          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29
Identity = 88/252 (34.92%), Postives = 121/252 (48.02%), Query Frame = 2
Query:    8 GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAG--------HYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIFD 739
            GV  +  DVWWG VE      ++W  Y       K  GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S      P+  G    + Y +   +F + F       I +I +  GP+GELRYPSY    G W +PG G FQ Y +    + K A  +A   ++GS    +A            N P D   F   NGG+ S YG+ FLSWY  +L  H   I A+A   FD
Sbjct:   69 GVYAITTDVWWGYVESAGDNQFDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEALS------PLWSGTG--KQYDELYASFAENFAG-YKSIIPKIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTE----TAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDGF-YTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFD 304          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29
Identity = 85/250 (34.00%), Postives = 118/250 (47.20%), Query Frame = 2
Query:    8 GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAG------KPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIFD 739
            GV  +  DVWWG VE      ++W  Y    +  K  GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S      P+  G    + Y +   +F   F       I +I +  GP+GELRYPSY    G W +PG G FQ Y +   ++ + A              WG T  T     N   +   F+   NGG+ S YG+ FLSWY  +L  H   I A+A   FD
Sbjct:   69 GVYAITTDVWWGYVESAGDNQFDWSYYKTYADAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANNEALS------PLWSGTG--KQYDELYASFAQNFAG-YKSIIPKIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINTAWG-TKLTSLSQINPPTDGDGFY--TNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFD 304          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 86/252 (34.13%), Postives = 126/252 (50.00%), Query Frame = 2
Query:    8 GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNW--------PEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIFD 739
            GV  +  DVWWG VE      ++W  Y    +  K+ GLK   ++S H+CGGNVGD  +IPLP W+  +   D ++ + D+ G  N E +S     +    G+   + Y+ F + F   +KD+    I +I +  GP+GELRYPSY    G W +P  G FQ Y +    + K+A  +A   ++GS    +A    N         P D+  F    GG+   YG+ FLSWY  +L +H   I A+A   FD
Sbjct:   70 GVYAITTDVWWGYVESAGDNQFDWSYYKTYADTVKQAGLKWVPIISTHRCGGNVGDDCNIPLPSWLWSKGSAD-EMQFKDESGYVNNESLSPFWSGV----GKQYDELYASFAQNF-SAYKDM----IPKIYLSGGPSGELRYPSYYPAAG-WSYPARGKFQVYTE----TAKSAFRTAMTTKYGSLDKINAAWGTNLTSMSQISPPTDSDGF-YTGGGYNITYGKDFLSWYQSVLENHLGVIGAAAHKNFD 305          
BLAST of FC921141 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 78/251 (31.08%), Postives = 122/251 (48.61%), Query Frame = 2
Query:    8 GVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYIS-LGCDTIPVLKGRTPVQCYSDFMRAFKDKFKDLLGDTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGEEILASAKSIFD 739
            G   + +D WWG +E++    +++       +  K  G+K+  ++S HQCGGNVGD  ++P+P WV  +   D  L +  + G  N E ++ L  D I    G    + Y+ F  A K  +KD+    I +I +  GPAGELRYPSY   +GT  +P  G FQ Y ++  S        K  + +     WG+   ++       P D + F     G+ S YG+ +L WY  +L +H + I   A + FD
Sbjct:   72 GFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLASDVIRKEYG----ELYTAFAAAMK-PYKDV----IAKIYLSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLM--NGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFD 307          
The following BLAST results are available for this feature:
BLAST of FC921141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_THETU3.158e-3536.00Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_PAEPO3.382e-2934.92Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACFI5.768e-2934.00Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_BACCI9.839e-2934.13Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACCE5.587e-2431.08Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32101F02EF RVDevelopN Citrus clementina cDNA clone C32101F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921141 ID=FC921141; Name=FC921141; organism=Citrus clementina; type=EST; length=741bp
GAGCGCGGGAGTGGAAGGAGTTATGATGGACGTGTGGTGGGGCCTGGTCG
AGAGGGACCAGCCCGGCCATTACAATTGGGGTGGCTATTCTGACTTGCTC
GAAATGGCCAAACGACACGGCCTCAAGGTTCAGGCCGTCATGTCGTTTCA
CCAGTGCGGCGGCAACGTCGGTGATTCCGTCTCTATCCCTTTACCCAAGT
GGGTTGTAGAAGAAGTTGACAAAGACCAAGATCTTGTGTACACTGATCAA
TGGGGGATGAGGAATTACGAGTACATTTCACTAGGTTGTGATACCATTCC
GGTCCTGAAAGGTCGAACGCCTGTCCAGTGTTACTCTGACTTCATGCGTG
CCTTCAAAGACAAGTTCAAGGACCTTCTTGGTGACACCATTGTGGAAATC
CAAGTGGGAATGGGTCCAGCTGGTGAGCTGCGTTACCCTTCGTATCCAGA
GCAGAATGGGACATGGAAATTCCCAGGAATTGGAGCTTTCCAGTGTTATG
ATAAGTATATGCTCAGTAGCTTAAAAGCAGCAGCTGAATCTGCTGGTAAG
CCAGAATGGGGCAGCACAGGCCCTACTGATGCTGGACATTACAACAACTG
GCCAGAAGATACACAGTTTTTCCGAAAAGAAAATGGTGGTTGGTGTAGCC
CTTATGGTGAATTTTTCCTAAGCTGGTATTCGCAGATGCTCTTAGATCAC
GGAGAAGAGATTCTCGCATCTGCCAAGTCAATTTTCGATGC
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