FC921164

Overview
NameFC921164
Unique NameFC921164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184C_HUMAN (Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 48/171 (28.07%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 639
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H  FP     P    +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKH--FPPLCCCPPWA-MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVI 215          
BLAST of FC921164 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 1
Query:  142 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 606
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEA VI  F++L Y YL     ++ +  EI+G+    S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEAFVIYNFLSLCYEYLG---GESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVILQAFGKY 200          
The following BLAST results are available for this feature:
BLAST of FC921164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
T184C_HUMAN2.879e-1128.07Transmembrane protein 184C OS=Homo sapiens GN=TMEM... [more]
T184B_MOUSE2.879e-1128.03Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]

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Properties
Property NameValue
Genbank descriptionC32101H06EF RVDevelopN Citrus clementina cDNA clone C32101H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921164 ID=FC921164; Name=FC921164; organism=Citrus clementina; type=EST; length=698bp
GAATCACAAATACAAAGACGCAGATACAAGAGTCAGTCACGAGAGACACA
GTTTGAATCACCATCATCATCGTCGTCGTCGTCGTCGTCGTGAGCGATGG
ATCTGAGCACGATGAGTCGGGCGCAAATCACATTGATGGGATCGGGATTG
TGCGTGATGCTGACAATGAATTTCACGATGCGGCTCTTGCAACAGCATCT
CTTTTACTGGAAGAATCCGAAGGAGCAGAAGGCTATCATTATCATAATCC
TTATGGCTCCCATTTACGCTGTTGATTCTTTTGTAGGTTTGTTGGATATC
AAGGGTAGCAAACCCTTCTTCACCTTTTTGGACTCCGTCAAGGAATGCTA
CGAGGCTCTGGTTATTGCTAAGTTCATGGCTTTAATGTACAGTTATTTGA
AGATTTCGATTAGTAAGAACATTGTGCCGGATGAAATTAAAGGAAGAGAG
TTTCATCATTCCTTTCCCATGACTCTTTTCCAGCCACGCACTGTCCGCCT
GGATCACCATACATTGAAGCTCCTCAAATACTGGACGTGGCAGTTTGTTG
TTATCCGCCCAATATGTTCCATATTGATGATTACACTGCAACTTCTTCGG
ATATACCCCTCTTGGTTGAGCTGGACATTTACAATCATTCTAAACGTTTC
AGTTTCATTGGCATTGTACTCTTTGGTGGTCTTCTACATGTTTTTGCA
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